Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   3.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   3.1  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    22   9.4  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 247  LDLWRIRRYLHLLIFTWTFKTHRDNKI 167
            LD +++   LHLL   W  + HR + I
Sbjct: 933  LDGFKMYARLHLLHLNWKHEVHRQSTI 959


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 247  LDLWRIRRYLHLLIFTWTFKTHRDNKI 167
            LD +++   LHLL   W  + HR + I
Sbjct: 934  LDGFKMYARLHLLHLNWKHEVHRQSTI 960


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 279 NSANIKLSIIIWISGEFGVICIY*FLHGHLKRIVII 172
           NS  +KLSII  +      +C+    H H  R V I
Sbjct: 519 NSFKMKLSIIFGVVHMIFGVCMSLVNHNHFNRRVNI 554


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,573
Number of Sequences: 2352
Number of extensions: 8915
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41245467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)