Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 127 YKL*YSNLNFRKGLFY 174
           YK  Y+N N+ K L+Y
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 127 YKL*YSNLNFRKGLFY 174
           YK  Y+N N+ K L+Y
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 127 YKL*YSNLNFRKGLFY 174
           YK  Y+N N+ K L+Y
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 127 YKL*YSNLNFRKGLFY 174
           YK  Y+N N+ K L+Y
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 326 KNMSFSRYFCILNVCVTVQILN 261
           K + F+     +++CVTV +LN
Sbjct: 309 KYLIFAMILVSISICVTVVVLN 330


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 326 KNMSFSRYFCILNVCVTVQILN 261
           K + F+     +++CVTV +LN
Sbjct: 309 KYLIFAMILVSISICVTVVVLN 330


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 264 KLSIIIWISGEFGV 223
           KLS I W + EFG+
Sbjct: 373 KLSTIYWFTVEFGL 386


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 326 KNMSFSRYFCILNVCVTVQILNYRSSSGSLEN 231
           K + F+     L++ +TV +LN    S S  N
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNVHFRSPSTHN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,708
Number of Sequences: 438
Number of extensions: 2542
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)