Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing pro...    29   1.2  
At5g14930.2 68418.m01752 leaf senescence-associated protein (SAG...    28   3.7  
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar...    27   8.5  
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar...    27   8.5  
At2g20010.1 68415.m02339 expressed protein                             27   8.5  

>At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 217

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -2

Query: 253 HHLDLWR---IRRYLHLLIFTWTFKT 185
           H LD+WR   IR YLH L+ + +F+T
Sbjct: 136 HQLDIWRLVHIRHYLHPLLLSSSFET 161


>At5g14930.2 68418.m01752 leaf senescence-associated protein
           (SAG101) nearly identical to leaf senescence-associated
           gene SAG101 (putative acyl hydrolase) [Arabidopsis
           thaliana] GI:8699168; contains Pfam profile PF01764:
           Lipase
          Length = 537

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 108 FGTFFFCFSNICSCVRHNFVIIVLM 34
           FGTF  CF + C C+  +  +  L+
Sbjct: 216 FGTFLICFDSGCVCIEDHVAVTELL 240


>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar
          to alcohol dehydrogenase from Solanum tuberosum
          [SP|p14673]; contains Pfam zinc-binding dehydrogenase
          domain PF00107
          Length = 352

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 29 LRIKTIITKLCRTQLQIFEKQ 91
          +RIK + T LCR+ L  +E Q
Sbjct: 14 IRIKVVCTSLCRSDLSAWESQ 34


>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase from Solanum tuberosum
           [SP|p14673]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 381

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 29  LRIKTIITKLCRTQLQIFEKQ 91
           +RIK + T LCR+ L  +E Q
Sbjct: 43  IRIKVVCTSLCRSDLSAWESQ 63


>At2g20010.1 68415.m02339 expressed protein
          Length = 834

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 296 ILNVCVTVQILNYRSSSGSLENSALFAFINFYMDI*NAS***NNP 162
           I NVC    ++N   S+G +EN  L A  N  ++I N +   N+P
Sbjct: 182 IHNVCFLWVLVNRYVSTGQVENDLLVAAHNLILEIENDAMETNDP 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,193,910
Number of Sequences: 28952
Number of extensions: 165759
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)