Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0396
         (452 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00001C5211 Cluster: PREDICTED: hypothetical protein;...    33   2.2  
UniRef50_UPI000038D800 Cluster: COG2319: FOG: WD40 repeat; n=3; ...    33   2.9  
UniRef50_A6GGR9 Cluster: Serine/threonine protein kinase; n=2; P...    32   6.6  

>UniRef50_UPI00001C5211 Cluster: PREDICTED: hypothetical protein;
           n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 95

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = +1

Query: 100 NSNRIHL*SSGVYLQTKIPCASCII*PASTLQRDSYTDSRFR*SIVSQTVREINFIVN*K 279
           N N  H   SGV  +TK+ C+ CI  P +T Q  ++  S F  SI + +V  I      K
Sbjct: 3   NYNASHTMKSGVCKETKVACSYCI--PVTT-QPSTWDTSVFASSISNFSVAAIRTSWQPK 59

Query: 280 EEKKTHAVCSRCDVTEPAR 336
           EE+    +C + +++   R
Sbjct: 60  EERVYPGLCFQRNLSPQGR 78


>UniRef50_UPI000038D800 Cluster: COG2319: FOG: WD40 repeat; n=3;
           Nostoc punctiforme PCC 73102|Rep: COG2319: FOG: WD40
           repeat - Nostoc punctiforme PCC 73102
          Length = 2172

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +3

Query: 114 PLVKFRRLPSDQNSLRILYNITCFNFTTRFLH 209
           P +KF  +P+D++SLR+++++T  N +T F H
Sbjct: 698 PKLKFPEIPTDESSLRLIFSVTKVN-STNFSH 728


>UniRef50_A6GGR9 Cluster: Serine/threonine protein kinase; n=2;
           Plesiocystis pacifica SIR-1|Rep: Serine/threonine
           protein kinase - Plesiocystis pacifica SIR-1
          Length = 914

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 8   LSFIDSQFGRASPARHHYSGPWTSD*RDLC*I-PTESTCE 124
           LS+ D  FGRAS     Y+  WT   R+ C   P E+T E
Sbjct: 414 LSYADESFGRASGWMDRYAAEWTDARREACMARPPEATGE 453


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,147,132
Number of Sequences: 1657284
Number of extensions: 7475208
Number of successful extensions: 16506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16506
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)