Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0396
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   5.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   5.4  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    24   9.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    24   9.5  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 113 STCEVQASTFRPKF--PAHPV*YNLLQLYNAILTQI 214
           STC+  A TF PKF         NL  L+ A++ QI
Sbjct: 163 STCKYSAFTFLPKFLKEQFSKYANLFFLFTAVVQQI 198


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 LVKFRRLPSDQNSLRILYNITCFNFTTRFLHR 212
           L+K +RLP   N+L I + I   N + R ++R
Sbjct: 129 LIKTKRLPKPFNNLLIQFQIQVPNVSRRTVYR 160


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 72  GHQTDATSVKFQPNPLVKFR-RLPSDQNSLRILYNITCFNFTT 197
           GH+    S++  P P+V  R    S+ N++RI ++++  N  T
Sbjct: 172 GHKRSIVSMEIGPGPIVSGRLYTASEDNTIRI-WDVSTGNLLT 213


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 323 PNPRVYPKHPVSHY 364
           P PR+YP  P+++Y
Sbjct: 99  PQPRLYPSAPLNYY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,127
Number of Sequences: 5004
Number of extensions: 33129
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)