Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0396
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1241 + 28615175-28615828                                         27   5.3  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    27   9.3  

>06_03_1241 + 28615175-28615828
          Length = 217

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 182 AGYIIQDAQGILV*R*TPELHKWIRLEFNRGRVSLMSTGRCSDG 51
           AG+       I + R TP  H W++L F+ G V    +GR S G
Sbjct: 29  AGHSFSPPTRITLVRWTPPRHGWVKLNFD-GSVHNDGSGRASIG 71


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 122 HKWIRLEFNRGRVSLMSTGRCSDGAPGSL 36
           HK + L+F+ GRV    TG  S G+ G +
Sbjct: 245 HKQLTLDFSAGRVISSDTGGDSPGSGGKI 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,323
Number of Sequences: 37544
Number of extensions: 200623
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)