Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0396
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   3.1  
SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)                     28   3.1  
SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   9.6  

>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 26   QFGRASPARHHYSGPWTSD 82
            ++G++S  RH+  GPW +D
Sbjct: 1638 KYGKSSSCRHYKGGPWAND 1656


>SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 249 DCL*DNASSESTICVRIAL*S*SRLYYTGCAGNFGLK 139
           DCL DN  +   +C+  +L   S +  T C+ NFGL+
Sbjct: 243 DCLGDNGKTNFIVCIAPSL---SEVNETKCSLNFGLR 276


>SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 329 PRVYPKHPVSHYPLQL 376
           P+ YP HP+ HYP  L
Sbjct: 51  PQYYPTHPIPHYPNSL 66


>SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 26  QFGRASPARHHYSGPWTSD 82
           ++G++S  RH+  GPW +D
Sbjct: 74  KYGKSSSCRHYKGGPWAND 92


>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 218  DSDEALSHKQSVKLILLSIRXXXXXHTLYVAVVTSPNPRVYPKHPVSHYPLQLN 379
            D DE  +   +    LL+I      H L +A  T  N  +YPK+      LQL+
Sbjct: 917  DDDETFTDGVNTGTNLLAIAVHEIGHILGIAHSTDKNSVMYPKYETYKPNLQLH 970


>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 317 TSPN--PRVYPKHPVSHYPLQLNNSIHTRIVTMTIV 418
           TSP+   RV  +HPV +YP   + S  TR++T  ++
Sbjct: 440 TSPSRTTRVITRHPVKYYPC-TSPSRTTRVITRNVL 474


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 HPVSHYPLQLNNSIHTRIVTMTIVSQINSDTVI 445
           H   H+    NN+I T I+T+TI+  IN+   I
Sbjct: 243 HYHHHHHHHNNNTIITTIITITIIITINNTITI 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,522
Number of Sequences: 59808
Number of extensions: 258300
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)