Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0396
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22600.1 68418.m02640 expressed protein ; expression supporte...    27   4.5  
At2g43570.1 68415.m05413 chitinase, putative similar to chitinas...    27   4.5  
At5g06610.1 68418.m00747 expressed protein contains Pfam profile...    27   5.9  
At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identic...    27   7.8  
At3g55320.1 68416.m06144 ABC transporter family protein similar ...    27   7.8  

>At5g22600.1 68418.m02640 expressed protein ; expression supported
           by MPSS
          Length = 418

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 296 CVFFSSF*LTIKLISRTVCETMLHLNLLSV 207
           CV+F  +   +  +S  +CET+LHL L  V
Sbjct: 76  CVYFREY-WEVMPVSLYICETLLHLRLYRV 104


>At2g43570.1 68415.m05413 chitinase, putative similar to chitinase
           class IV GI:722272 from [Brassica napus]
          Length = 277

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 181 QVILYRMRREFWSEGRRLNFTSGFGWNLTEVASV*C 74
           QV+ ++    FW+   R +F SGFG  +  V S  C
Sbjct: 209 QVLAFKTAFWFWTTNVRTSFKSGFGATIRAVNSREC 244


>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 368

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 371 QLNNSIHTRIVTMTIVSQINSDTVI 445
           ++ N+  T  +TMT+VS INS T +
Sbjct: 100 EIKNTFVTGKITMTMVSDINSSTAV 124


>At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identical
           to ascorbate peroxidase 3 [Arabidopsis thaliana]
           GI:2444019, L-ascorbate peroxidase [Arabidopsis
           thaliana] gi|1523791|emb|CAA66926; similar to ascorbate
           peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954
          Length = 287

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 32  GRASPARHHYSGPWTSD 82
           GRA P R  + GPWT +
Sbjct: 163 GRAHPERSGFDGPWTQE 179


>At3g55320.1 68416.m06144 ABC transporter family protein similar to
            multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
            [Solanum tuberosum]
          Length = 1408

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 241  VRQCFI*IYYLCKNRVVKLKQVILYRMRREFWSEGRRLNFTSGF 110
            VR  +  + +   N+V++L ++ L R+ R+ +  G  + F  GF
Sbjct: 1025 VRNIYTVVAFCAGNKVMELYRMQLQRILRQSYLHGMAIGFAFGF 1068


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,159,578
Number of Sequences: 28952
Number of extensions: 168894
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)