Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0391
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    27   2.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.6  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    26   4.8  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    26   4.8  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    25   8.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.4  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   8.4  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
 Frame = +3

Query: 348 LSTEEEDERLKQRPADIDADVREMER-----RKRVEALMSSKLFREELERVLDQQMHEGA 512
           L  EE ++ L ++  D+D+  + ++      RK  EAL  SKL  + L  V+D    +  
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727

Query: 513 TLRSCRGSRRWSAGDCTPEASGVLAAFCRSTTSEVSK 623
           TL + R     S  D     + +L++    ++ +V +
Sbjct: 728 TLEAQRNDLHSSLSD-AKNTNAILSSELTKSSEDVKR 763


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = -3

Query: 705 PKQNRTSPGTRRPACSG-VSSPPFSYPMPSIP--RMSLIGRTQLGPLRLPVCSL-PPTIS 538
           P  +  +P    P  +G VSSPP S P P  P      I  T   PL  P   +    ++
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305

Query: 537 LILCRSGASPPRASAGRGPVPILRGTAS 454
               R    PP +   RG  PI  G+++
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSN 333


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +3

Query: 441 ALMSSKLFREELERVLDQQMHEGATLRSCRGSRRWSAGDCTPEASGV----LAAFCRSTT 608
           A + S+LFRE++ RV   ++HE A  R   G+  +     +P  S +      A+ +S  
Sbjct: 141 ARIESELFREDILRVAMAKLHEKAFHRGI-GNEVYLPASASPSISEIKDFASKAYVKSNF 199

Query: 609 SEVSKA*GMRRGEKILRCKLAAVYP 683
           S +S    +++    L  K  AV P
Sbjct: 200 SVISSGPDVQKASD-LCAKYFAVIP 223


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 357 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 476
           EE++E + +   D+  D + ME  +R+  + +++LF + +
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRV 556


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/66 (21%), Positives = 36/66 (54%)
 Frame = +3

Query: 297 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 476
           +G  + +SE        +   E +E+L +R    + +++E+E+++++EA +     +E+ 
Sbjct: 84  LGKFQQESEREQKSARKVKRAELEEKLAKRR---EQELQELEKQEKIEAEILESRLQEQR 140

Query: 477 ERVLDQ 494
           +  LD+
Sbjct: 141 KVALDE 146


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +3

Query: 522 SCRGSRRWSAGDCTPEASGVLAAFCRSTT----SEVSKA*GMRRGEKILR 659
           +C G  R   G+CTP+ S       R  T     E S+      GE++LR
Sbjct: 224 ACTGDSRAVLGECTPDGSWEAIPLSRDQTGMNPDEASRLEVEHPGEEVLR 273


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 256 YPVARVLQESCTVQQMARRSDKLDDHYTQNSHTNLNGDRNRH 131
           YP A +   +  V +  ++S K++D Y  ++   L+ +RN H
Sbjct: 226 YPAAVLGAGASQVNKKKKKSKKINDSYHTDAVLALSSNRNAH 267


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 568 SGVQSPADHLLDPLQERSVAPSCICW 491
           SGV++ A  LLDP    SV    +C+
Sbjct: 217 SGVEAAATELLDPKNPSSVTKQDLCY 242


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 494 LVEDPFQFFAEQLRGHESF-DALPAFHFADIGVDVGRTLLQAL 369
           +V+D FQ   E+L G  S+ D    FHF+DI +  G  +   L
Sbjct: 72  VVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 348 LSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELER-VLDQQ 497
           L T EE  R   +  +IDA +   ER       +  KL RE+LE  VL+ Q
Sbjct: 263 LDTAEETLRSCIQGLNIDAKIVRKERSVGFVPSLGQKLRREQLEEAVLETQ 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,952
Number of Sequences: 5004
Number of extensions: 64366
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)