Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0391
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.42 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 317 VRLSHSDSSSLLICQARPGLVSGSTSP-SGVMHGPADGP 204
           + L     S L   + R GLVSGS++P +G  H PA  P
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFP 408


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 618 IPRMSLIGRTQLGPLRLPVCSLPP 547
           IPR SL+  T +  LRL     PP
Sbjct: 739 IPRASLVSTTSVKSLRLEGDETPP 762


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 347 GSGAVRDRL*VRLSHSDSSSLLICQARPGLVSGSTSPSGV 228
           G GA R  +  RLS   +  +L+ +A P   +G+  PS +
Sbjct: 75  GGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNL 114


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 438 EALMSSKLFREELERVLDQQMHEGATLRSCRGSRR 542
           E L  +K+ +EE+  +LD+ +   + +     S+R
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 472


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 438 EALMSSKLFREELERVLDQQMHEGATLRSCRGSRR 542
           E L  +K+ +EE+  +LD+ +   + +     S+R
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 178


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 675 RRPACSGVSSPPFSYPMPSIPRMS 604
           R PA  G   P    PMP IP MS
Sbjct: 402 RSPA-GGQLPPSAGAPMPPIPNMS 424


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 425 PEARRSSHVLEAVPRRIGTGPRPADARGGDAPLLQRI 535
           P+   SS    A P  + + PR  D    D P+L+R+
Sbjct: 589 PDKPASSSASSA-PTSVCSSPRSEDKEVEDMPVLKRV 624


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 99  ALIVLFIIFTALA*QTPHVQALF 31
           ALI + I+ TAL   T  +  LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,799
Number of Sequences: 438
Number of extensions: 5023
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)