Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0389
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    27   5.5  
AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine re...    27   5.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   9.7  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    27   9.7  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    27   9.7  

>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
           protein F31D5.5 protein.
          Length = 1788

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 155 MSGHNCVHII*GVNNNGESRSLMT---LKNHITIIE*KSSNKP 36
           M+G  C++   GV N GE   ++T   L  H+ +IE + S+ P
Sbjct: 804 MNGDPCINSCKGVLNRGELDDMLTVHRLGQHLNLIEFQFSDTP 846


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
           protein MTH-1 protein.
          Length = 1757

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 155 MSGHNCVHII*GVNNNGESRSLMT---LKNHITIIE*KSSNKP 36
           M+G  C++   GV N GE   ++T   L  H+ +IE + S+ P
Sbjct: 773 MNGDPCINSCKGVLNRGELDDMLTVHRLGQHLNLIEFQFSDTP 815


>AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein6 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 220 LIYFVHKVQAAQTKPVTLT*AQCLDTIACIL-SKVSTTTGNLDL 92
           LIY + + +  QTK   L   QCL  I C++ ++V T    LD+
Sbjct: 31  LIYLIARRKKLQTKSSILQAIQCLCHIICLIGTQVDTVLTILDI 74


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 287 TNVTNFGYPPKTDTYF-A*LIDSIKMLQIMNRLNLE 391
           T +  FG+P K+ +YF    +D+IK     N +N E
Sbjct: 769 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAVNTE 804


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
           protein F39B2.4a protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 287 TNVTNFGYPPKTDTYF-A*LIDSIKMLQIMNRLNLE 391
           T +  FG+P K+ +YF    +D+IK     N +N E
Sbjct: 767 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAVNTE 802


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 287 TNVTNFGYPPKTDTYF-A*LIDSIKMLQIMNRLNLE 391
           T +  FG+P K+ +YF    +D+IK     N +N E
Sbjct: 767 TIINGFGWPEKSTSYFPKWALDAIKASDTSNAVNTE 802


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical protein
            F31D5.4 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 334  KISIGFRWITEIGYICFPVISIFSFSSKYA*GQLKLSILIYFVHKVQAAQTKPVTL 167
            +IS+G  WI + G +  P  + + ++     G     +L+ F++K   A     TL
Sbjct: 900  QISLGLPWILQFGTLYSPYTTFWHYTFTIVLGSQGTILLLIFLYKRYRAWQADSTL 955


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
            protein MTH-2 protein.
          Length = 971

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 334  KISIGFRWITEIGYICFPVISIFSFSSKYA*GQLKLSILIYFVHKVQAAQTKPVTL 167
            +IS+G  WI + G +  P  + + ++     G     +L+ F++K   A     TL
Sbjct: 882  QISLGLPWILQFGTLYSPYTTFWHYTFTIVLGSQGTILLLIFLYKRYRAWQADSTL 937


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  SRFPVVVDTLDNMHAIVSRHWAYVRVTG 179
           SR PVVVD+    +  V RH  Y   TG
Sbjct: 113 SRLPVVVDSATPKNRFVFRHRGYRAATG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,234
Number of Sequences: 27780
Number of extensions: 187931
Number of successful extensions: 285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)