Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0389
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 260  KTKNRDYWKTNVTNFG 307
            KT+  D+W T  TN G
Sbjct: 1244 KTRRYDFWVTASTNIG 1259


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 79  KTTSQSLNKNQATNRIQTGFI 17
           K  S +LN N+   RIQ G +
Sbjct: 383 KYMSGTLNSNETNFRIQAGLV 403


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 111 VVDTLDNMHAIVSR 152
           ++DTL+N+ AIV R
Sbjct: 368 LIDTLENVLAIVDR 381


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 173 DPNISPMSGH 144
           DPN+ P+S H
Sbjct: 56  DPNVRPISSH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,033
Number of Sequences: 438
Number of extensions: 2214
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)