Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0389
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19620.1 68414.m02445 expressed protein                             27   6.8  
At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing ...    27   9.0  

>At1g19620.1 68414.m02445 expressed protein
          Length = 317

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 337 CKISIGFRWITEIGYICFPVI 275
           CK ++G   +   GY C PVI
Sbjct: 19  CKYTVGLSAVVAFGYCCLPVI 39


>At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing
           protein finger protein rolB, Arabidopsis thaliana,
           PID:g1359493
          Length = 232

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 417 INDNVVKFIYLHRGYY*NQVDRY 485
           +N  V  ++  H GY+ NQVD+Y
Sbjct: 177 VNQQVGGYVDNHNGYHMNQVDQY 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,283,472
Number of Sequences: 28952
Number of extensions: 166617
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)