Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0388
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 99 7e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 8e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 8e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.087
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.61
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 4.3
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 5.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 7.6
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 10.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (421), Expect = 2e-44
Identities = 78/85 (91%), Positives = 80/85 (94%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 434
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 435 THIMFETFNTPAMYVAIQAVLSLYA 509
T I+FETFN PA YVAIQAVLSLYA
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYA 144
Score = 123 bits (297), Expect = 2e-29
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 109 bits (261), Expect = 5e-25
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 509 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 667
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERG 197
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 42/83 (50%), Positives = 62/83 (74%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTH 440
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 441 IMFETFNTPAMYVAIQAVLSLYA 509
MFE + +YVAIQAVLSLYA
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA 144
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = +2
Query: 512 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 667
G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +G
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG 197
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQA 258
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 98.7 bits (235), Expect = 7e-22
Identities = 42/79 (53%), Positives = 53/79 (67%)
Frame = +3
Query: 273 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFE 452
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 453 TFNTPAMYVAIQAVLSLYA 509
+FN +Y+A+QAVL+L A
Sbjct: 149 SFNCAGLYIAVQAVLALAA 167
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +2
Query: 521 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 664
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 249
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.1 bits (221), Expect = 3e-20
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 437
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 438 HIMFETFNTPAMYVAIQAVLSLYA 509
+ET N PA+ ++Q VL+LYA
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYA 149
Score = 69.3 bits (162), Expect = 5e-13
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Score = 68.9 bits (161), Expect = 6e-13
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +2
Query: 509 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 667
S RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G
Sbjct: 150 SARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSG 202
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = +3
Query: 270 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMF 449
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 450 ETFNTPAMYVAIQAVLSLYA 509
E+ PA Y+A Q + +A
Sbjct: 123 ESLRCPATYLAKQETCAAFA 142
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 186
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 500 AVRSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 664
A SG+ T ++D G S IY+G+ L +G + D L + L ++
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDK 194
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNT 464
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 465 PAMYVAIQAVLSLYAPVVPPVS 530
P++ I + S Y P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 195
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 518 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 652
++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.0 bits (119), Expect = 8e-08
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +3
Query: 294 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNTPAM 473
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 474 YVAIQAVLSLYA 509
Y+ QAV +A
Sbjct: 134 YLTKQAVCVAFA 145
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTHIMFE 452
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 453 TFNTPAMYVAIQAVLSLYA 509
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +2
Query: 527 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 664
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.087
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -3
Query: 266 TSFACASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 102
TS +C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 101 NAATSSS 81
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 345 FYNELRVAPEEHPVLLTE--APLNPKANREKMTHIMFETFNTPAM---YVAIQ 488
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 509 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 655
+G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 288 AGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLL 336
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -3
Query: 317 IPVSDDSVFDGVFEGQDTSFACASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 138
+P + +V +TSFA ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 137 PALHIP 120
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 510 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 602
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -2
Query: 276 GSGYLFCLCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 519 PPVSCWTPATVSPTPCPSTKDTHSP 593
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 249
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 454 HST-RPPCTSPSKPCSRCTL-RSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSR 627
HST R TSP+ R R+ +R G RR P+R HL R RH + R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH---RHSTTNYHSKR 177
Query: 628 PHRLPHEDPH 657
R H
Sbjct: 178 DDRYERRREH 187
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 298 PCSMGYLRVRIPLLLVPHLLHKSPSVPYRP 209
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 387 LLTEAPLNPKANREKMTHIMFETFN 461
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +1
Query: 571 LRRIRTPPRHPASGLS----RSRPHRLPH 645
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 450 ETFNTPAMYVAIQAVLSLYAPVVPPVSCWTPATVSPTPCPSTKDT 584
+T ++ + S +P S TPA V P P PST T
Sbjct: 815 KTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTSTT 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,463
Number of Sequences: 5004
Number of extensions: 69614
Number of successful extensions: 246
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -