Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0385
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 29 2.8
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023) 29 4.9
SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 6.5
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 6.5
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 28 6.5
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 28 6.5
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 28 8.5
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 8.5
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 8.5
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 8.5
SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12) 28 8.5
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 8.5
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 28 8.5
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 28 8.5
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 28 8.5
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.5
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 330 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 505 RRHGTEHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 639
R +H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 879 RGEPNDHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
Length = 650
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 463 PSRRTTRKHCSTTHRRHGTEH 525
PS T+++H ST+H+R T H
Sbjct: 415 PSSSTSKQHASTSHQRASTSH 435
>SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 529
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 483 EALLHNAPPTWDGTRHD*WLHRAQSSDL 566
++ LH+ P +W D WLHR S L
Sbjct: 179 DSRLHSTPDSWLNRTPDSWLHRTTDSKL 206
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 454 QHGPSRRTTRKHCSTTHRRHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYY 633
Q G R ++ TH + H+ GCI TF W P+ E+K++I + C
Sbjct: 636 QLGVPRALRKELMEKTH----SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLT 690
Query: 634 YNYG 645
+ G
Sbjct: 691 HRSG 694
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 436
+ T + + Y TN Y+ D +++ ++ T L L + RRL
Sbjct: 70 YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129
Query: 437 AQHADDSMDP--LDVPQGSTAPQRT 505
QH + P P +TAP T
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATT 154
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 273 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 314
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 856 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 897
>SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 364
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 276 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 317
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 82 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 123
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 969 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 1010
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 174
>SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 270
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 100 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 141
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 368 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 409
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 226 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 267
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 776 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 817
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 106 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 106 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 392 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 433
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 645
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 247 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,813,099
Number of Sequences: 59808
Number of extensions: 508270
Number of successful extensions: 1438
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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