Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0384
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.51 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.4  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = -2

Query: 498 RVVPPCTPGIAAGMQKEITGSRPIDNED*DHCSSKEEVLGMDRWIDPRLPLYLPT 334
           RV+P   PG    +       +P   ED      +  + G+  W  PR   Y PT
Sbjct: 28  RVLPTVEPGYLRPLIPATAPQKPDKWEDVMADIERVIMPGVTHWHSPRFHAYFPT 82


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 388 STRYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTG 278
           S R  S D  +   LP++RC SR  S + + P   +G
Sbjct: 65  SPRSISEDPLNCRDLPNSRCNSRESSDSLVQPRCPSG 101


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 490 TPMYPWNRRRYAK 452
           +P+YPW R ++ +
Sbjct: 230 SPLYPWMRSQFER 242


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 490 TPMYPWNRRRYAK 452
           +P+YPW R ++ +
Sbjct: 232 SPLYPWMRSQFER 244


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 478 GTWGYHPDN 504
           G W Y PDN
Sbjct: 74  GQWNYSPDN 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,747
Number of Sequences: 336
Number of extensions: 2163
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)