Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0384
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 118 4e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 3e-09
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 54 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 4e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 43 3e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 7e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 28 0.92
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.92
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 4.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 118 bits (285), Expect = 4e-28
Identities = 52/62 (83%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ QALAPS+MK+KI+APP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RK
Sbjct: 314 QKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRK 373
Query: 275 CF 270
CF
Sbjct: 374 CF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 56.0 bits (129), Expect = 3e-09
Identities = 22/44 (50%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -3
Query: 395 KRKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 273
+R Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/58 (39%), Positives = 43/58 (74%)
Frame = -3
Query: 443 QALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 270
+A++ ++KI A P+R ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 323 RAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 4e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 383 SVWIGGSILASLSTFQQMWISKQEYDESG 297
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 42.7 bits (96), Expect = 3e-05
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 419 KIKIIAPPKRKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 297
K+KI P+R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 38.3 bits (85), Expect = 7e-04
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 416 IKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 279
+ +I+ +++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 0.92
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 285
KR+ ++ P I + W G S + F+ ++++EY E GP +
Sbjct: 655 KRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 377 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 276
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 385 TRYGSVDRSSPPSLPSNRCG--SRNRSTTSLAP 293
+RY + SSPP P N G + N +TTS P
Sbjct: 1611 SRYNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 385 TRYGSVDRSSPPSLPSNRCG--SRNRSTTSLAP 293
+RY + SSPP P N G + N +TTS P
Sbjct: 1611 SRYNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 416 IKIIAPPKR---KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
I +I PP+ ++ W G I + ++WI ++ G ++ K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 355 PPSLPSNRCGSRNRSTTSLAPP 290
PPS+PS+R R S ++ APP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPP 254
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 350 LSTFQQMWISKQEYDESGPSIV 285
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,643
Number of Sequences: 5004
Number of extensions: 32611
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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