Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0384
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 4e-28
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 121 4e-28
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 9e-28
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 1e-27
SB_56| Best HMM Match : Actin (HMM E-Value=0) 119 1e-27
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 103 6e-23
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 50 1e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 32 0.31
SB_47955| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1) 31 0.41
SB_51456| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99) 31 0.41
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_23104| Best HMM Match : DUF947 (HMM E-Value=0.098) 28 3.8
SB_6040| Best HMM Match : DUF947 (HMM E-Value=0.098) 28 3.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_13094| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 27 6.7
SB_8208| Best HMM Match : ShTK (HMM E-Value=1.2e-21) 27 8.9
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 122 bits (293), Expect = 2e-28
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRK
Sbjct: 288 QKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRK 347
Query: 275 CF 270
CF
Sbjct: 348 CF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 121 bits (291), Expect = 4e-28
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 314 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 275 CF 270
CF
Sbjct: 374 CF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 121 bits (291), Expect = 4e-28
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 120 bits (288), Expect = 9e-28
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRK
Sbjct: 277 QKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRK 336
Query: 275 CF 270
CF
Sbjct: 337 CF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 119 bits (287), Expect = 1e-27
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ +LAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 119 bits (287), Expect = 1e-27
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ +LAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 314 QKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 275 CF 270
CF
Sbjct: 374 CF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 103 bits (248), Expect = 6e-23
Identities = 45/56 (80%), Positives = 52/56 (92%)
Frame = -3
Query: 437 LAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 270
LA ++MK+K+IAPP+RKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 94 LANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = -3
Query: 437 LAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 258
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 419 KIKIIAPPKRKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 297
KI+I PP+RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Frame = -3
Query: 452 RKSQALAPSTMKIKIIA---PPKRKYSVWIGGSILASL 348
R+ + P +M++K+I+ +++++ WIGGSILASL
Sbjct: 193 RELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_47955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 334 CWKVEREARIDPPIHTEYFLFGGAMILIFIVDGARACDFLLHTG-GD 471
C+K+ E + P H Y+ + L ++ A CDF+LH+G GD
Sbjct: 87 CFKISDEKLVLRPTHAHYY----QVQLQLLITNANYCDFVLHSGVGD 129
>SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1)
Length = 337
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 334 CWKVEREARIDPPIHTEYFLFGGAMILIFIVDGARACDFLLHTG-GD 471
C+K+ E + P H Y+ + L ++ A CDF+LH+G GD
Sbjct: 281 CFKISDEKLVLRPTHAHYY----QVQLQLLITNANYCDFVLHSGVGD 323
>SB_51456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 334 CWKVEREARIDPPIHTEYFLFGGAMILIFIVDGARACDFLLHTG-GD 471
C+K+ E + P H Y+ + L ++ A CDF+LH+G GD
Sbjct: 108 CFKISDEKLVLRPTHAHYY----QVQLQLLITNANYCDFVLHSGVGD 150
>SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)
Length = 461
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 334 CWKVEREARIDPPIHTEYFLFGGAMILIFIVDGARACDFLLHTG-GD 471
C+K+ E + P H Y+ + L ++ A CDF+LH+G GD
Sbjct: 371 CFKISDEKLVLRPTHAHYY----QVQLQLLITNANYCDFVLHSGVGD 413
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 396 KEEVLGMDRWIDPRLPLYLPTD---VDLETGVRRVWPLH 289
K+ L ++RW R+P Y+ D+E G WP+H
Sbjct: 864 KKVTLAVNRWNQARMPTYVKLSQRYFDVEVGRDAWWPVH 902
>SB_23104| Best HMM Match : DUF947 (HMM E-Value=0.098)
Length = 807
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 504 IVRVVPPCTPGIAAGMQKEITGSRPIDNED*DHCSSKE 391
I R VP C P +QKEI G++ + ++ C+ KE
Sbjct: 78 IWRGVPTCIPCRLHHVQKEIAGAKQLHTKNNTICTGKE 115
>SB_6040| Best HMM Match : DUF947 (HMM E-Value=0.098)
Length = 405
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 504 IVRVVPPCTPGIAAGMQKEITGSRPIDNED*DHCSSKE 391
I R VP C P +QKEI G++ + ++ C+ KE
Sbjct: 100 IWRGVPTCIPCRLHHVQKEIAGAKQLHTKNNTICTGKE 137
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 479 PLESPPVCKRKSQALAPSTMKIKIIAPPKRK 387
P SPP +R+S + +P M+ + PP+RK
Sbjct: 926 PSPSPPRRRRRSPSNSPPPMRSSPLPPPQRK 956
>SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 250 QRARCV*KHFLCTMEGPDSSYSCFEIHICWKVEREARIDPPIHTEYFLF 396
++ RC + F CT+E P + + + CWKV PI T++ F
Sbjct: 23 KKQRCYDRDFCCTVERP-GLLTIPDDYTCWKVGPMWPFWSPIPTQFLRF 70
>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 504 IVRVVPPCTPGIAAGMQKEITGSRPIDNED*DHCSSKE 391
I R VP C P +QKEI G++ + ++ C+ KE
Sbjct: 49 IWRGVPTCIPCRLHHVQKEIAGAKQLHTKNNAICTGKE 86
>SB_13094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 486 PCTPGIAAGMQKEITGSRPIDNED*DHCSSKEEVLGMDRWIDPRL-PLYLP 337
PC PGI + + E+ G+ P+ + SS ++ + R D ++ Y+P
Sbjct: 136 PCDPGIGSNFRDELFGNNPMQPQTTSRISSNLGMILIPRTPDVQVSDFYVP 186
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 396 KEEVLGMDRWIDPRLPLYLPTD---VDLETGVRRVWPLH 289
K+ L ++RW R+P Y+ D++ G WP+H
Sbjct: 1105 KKVTLAVNRWNQARMPTYVKLSQRYFDVDVGRDAWWPVH 1143
>SB_8208| Best HMM Match : ShTK (HMM E-Value=1.2e-21)
Length = 226
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -3
Query: 497 GWYPHVPLESPPVCKRKSQALAP-----STMKIKIIAPPK 393
G PH P++ PPV K + P +T K APPK
Sbjct: 186 GKAPHPPIQEPPVTKTTTAPTEPPVTKTTTAPTKAPAPPK 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,825
Number of Sequences: 59808
Number of extensions: 278908
Number of successful extensions: 673
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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