Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0384
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 122 1e-28
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 122 1e-28
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 122 1e-28
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 122 1e-28
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 122 1e-28
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 122 1e-28
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 122 1e-28
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 122 1e-28
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 122 1e-28
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 122 1e-28
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 116 7e-27
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 82 3e-16
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 65 2e-11
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 52 3e-07
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 32 0.27
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 28 3.4
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ Q LAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 314 QKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 275 CF 270
CF
Sbjct: 374 CF 375
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 271 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 330
Query: 275 CF 270
CF
Sbjct: 331 CF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 301 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 360
Query: 275 CF 270
CF
Sbjct: 361 CF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAPSTMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 374
Query: 275 CF 270
CF
Sbjct: 375 CF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 116 bits (280), Expect = 7e-27
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3
Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 276
+++ ALAP TMKIKIIAPP+RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK
Sbjct: 315 QKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373
Query: 275 CF 270
CF
Sbjct: 374 CF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 81.8 bits (193), Expect = 3e-16
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 6/67 (8%)
Frame = -3
Query: 455 KRKSQALA---PSTMKIKIIAPP---KRKYSVWIGGSILASLSTFQQMWISKQEYDESGP 294
+R + ALA P T+K+++ A P +RKY WIGGSIL SL TFQQMW+SK EYDESG
Sbjct: 369 ERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGK 428
Query: 293 SIVHRKC 273
SIV +KC
Sbjct: 429 SIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 65.3 bits (152), Expect = 2e-11
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = -3
Query: 437 LAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 270
+AP+ KI+I A +R WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 319 IAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = -3
Query: 437 LAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 288
L P + +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = -3
Query: 419 KIKIIAPPKRKYSVWIGGSILASL--STFQQMWISKQEYDESG 297
KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -3
Query: 467 PPVCKRKSQALA---PSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWISKQE 312
P + ++ Q L+ P+T+ ++ P R + ++G I+AS STF+ IS Q+
Sbjct: 485 PGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 486 PCTPGIAAGM-QKEITGSRPIDNED*D--HCSSKEEVLGMDRWIDPRLPLYLP 337
P PG G+ Q TGS I D HC + LGM+R+ D +P+ P
Sbjct: 247 PGKPGSMGGLGQSGPTGSDGIPGIDGQYCHCPQRTHNLGMNRYHDEPIPVSKP 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,770,083
Number of Sequences: 27780
Number of extensions: 198265
Number of successful extensions: 507
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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