Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0384
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              83   1e-18
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 38/45 (84%), Positives = 43/45 (95%)
 Frame = -3

Query: 455 KRKSQALAPSTMKIKIIAPPKRKYSVWIGGSILASLSTFQQMWIS 321
           +++  ALAPSTMKIKIIAPP++KYSVWIGGSILASLSTFQQMWIS
Sbjct: 89  QKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 24.2 bits (50), Expect = 0.79
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 477 PGIAAGMQKEITGSRP 430
           PGIA  MQKEIT   P
Sbjct: 82  PGIADRMQKEITALAP 97


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 458 CKRKSQALAPSTMKIKIIAPP 396
           C  +   L P T+K KI  PP
Sbjct: 447 CFAQDDGLCPYTLKHKIRVPP 467



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 499 PGGTPMYPWNRR 464
           P GTP+Y  N+R
Sbjct: 466 PPGTPIYECNKR 477


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 341 FQQMWISKQEYDESGPSIVHRK 276
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 490 TPMYPWNRRRYAK 452
           +P+YPW R ++ +
Sbjct: 258 SPLYPWMRSQFER 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,781
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)