Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0381
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 30 0.22
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 3.6
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 26 3.6
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 26 3.6
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 4.8
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 4.8
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 6.3
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 8.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.4
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 336 DPFLQARSFIRLIRYFLKTCNRHDRVPEYVL-HFRGTDVFASHQVVNQLI 190
DPFL++R F IRYFL NR R Y+L H + AS+++ L+
Sbjct: 191 DPFLRSRMFTLTIRYFLLQKNRL-RTSFYLLKHMELLALPASYELKTTLL 239
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 336 DPFLQARSFIRLIRYFLKTCNRHDRVPEYVLHFRGTDVFASHQVVNQLIIIT 181
D L R +RL ++ + N+ +P+YV+ +RG AS +N I+ T
Sbjct: 889 DALLLIRMEVRL--QYIHSINQSVNLPDYVVEYRGRP-DASIMALNSTIVTT 937
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 346 NMQRSIPPGKILYTPDPVLSKDM*SARSSAGIRSPLPRNGCICLSSG 206
N+ + I PG+I+Y D +LS + ++ + NG I G
Sbjct: 139 NITKVIQPGRIIYVDDGILSFTVIEKVDDKNLKVRVNNNGKISSKKG 185
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 227 SVPRKWRTYSGTRSCRLHVFRKYRI 301
S P KW T GTR +L +K RI
Sbjct: 604 SFPEKWSTQVGTRGLQLSGGQKQRI 628
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 217 LSSGCQSTHYYHALNSLHLPFLMILFYHHLYEELPSHLS 101
LS+ Q ++ ALN ++ + F + +E+L SH++
Sbjct: 120 LSTSRQIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMA 158
>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 259 AGIRSPLPRNGCICLSSGCQSTHYYHALNSLHLPFLM 149
+G +S +P+ G CL C+S + + NSL + FL+
Sbjct: 45 SGAQSDIPKVGK-CLFLPCRSLEFRASANSLSVHFLL 80
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -3
Query: 304 PDPVLSKDM*SARSSAGIRSPLPRNGCICLSSGCQSTHYYHALNSLHLPFLMILFYHH 131
PD + + + S SA + R + LS G S L+ L+ PF FY H
Sbjct: 48 PDELQHRSLFSVLRSAFVYEICSRAWLVKLSLGAMSLCDVFHLSFLYNPFCRYTFYKH 105
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 261 LDRADYMSLESTGSGV*RILPGGMDLCIFQHPCLLQ*K*WKPLELETGLTFLDRR 425
++R Y SL S + +LP LC+ CL W ++ TGL+ + R
Sbjct: 559 VERRQYGSLSSNAVLMPMLLP----LCVLTSSCLQNGDVWLTKDIRTGLSQIFNR 609
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 480 GSHFPRPNPGCSSTLVQEPDGQEKLSRFPVLRASITFTVKDTGVEICRDPFLQARSF 310
G+ P + +S++ P ++ P S T T + TG+++C + A S+
Sbjct: 836 GALGPVQSSSTTSSITPTPTTTSSITPTPTT-TSTTTTAQSTGMQLCGSNYYDASSY 891
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 422 SGSWTRVLEHPGLGLGKWDP 481
+G+W PG +G+WDP
Sbjct: 103 AGTWCPYACEPGYLMGQWDP 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,000
Number of Sequences: 5004
Number of extensions: 44591
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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