Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0381
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    30   1.2  
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953...    29   2.1  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    27   6.3  
11_06_0207 + 21214631-21216121                                         27   6.3  

>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -1

Query: 387 RASITFTVKDTGVEICRDPFLQARSFIRLIRYFLKTCNRHDRVPEYVLHFRGTDVFA 217
           RA  T T   T  EI     L+  S  +L++    TC  HD   +  L F G+D+FA
Sbjct: 138 RAKTTKTSVPTPFEIIMKG-LEGTSGKQLVKEICPTCGDHDPKEDTWLMFPGSDIFA 193


>02_02_0535 -
           11292509-11294679,11294971-11295040,11295268-11295324,
           11298629-11298789,11299123-11299156
          Length = 830

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +1

Query: 109 AREVLHKGGGRKESLKMGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFRHSIVPITCL* 288
           AR +LH G   +  L  G  ++S R +N       R KY+ +AE+EN+ R          
Sbjct: 378 ARAMLHHGVHGQHYLPQGFELASMRMDNGW--PRFRSKYMSTAEIENIARMQQAATQIND 435

Query: 289 KVPDQAYKGSCL 324
              D  Y  +CL
Sbjct: 436 PYIDDYYHQACL 447


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 251 YSGTRSCRLHVFRKYR-IRRIKDLAWRNGSLHISTPVSF 364
           YS   S  LH   +YR  ++++++ WR+ S HI     F
Sbjct: 39  YSAVNSV-LHPISRYRSAQKVEEIRWRSSSYHIGNNTIF 76


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 229 RSAEVENVFRHSIVPITCL*KVPDQAYKGSCLEEWISAYFNTR 357
           ++A++  + +  ++ I  L ++PD    GS  + W SAY + R
Sbjct: 52  QAADLPELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLR 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,532
Number of Sequences: 37544
Number of extensions: 327757
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)