Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0381
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  50   8e-07
SB_50369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_57455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   4.9  
SB_24572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_13756| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.1)           27   8.6  

>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = +1

Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
           MGGAVS+G+DNNEL++NL    YI++ +VE VFR
Sbjct: 1   MGGAVSAGKDNNELVENLKEAGYIKTPKVEQVFR 34



 Score = 31.5 bits (68), Expect = 0.40
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 311 KDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
           KDLAW+  ++H+S P  ++ +VME L     L+F
Sbjct: 52  KDLAWKQKNVHLSAPCIYS-EVMECLELEEGLSF 84


>SB_50369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 250 RSPLPRNGCICL---SSGCQSTHYYHALNSLHLPFLMILFY 137
           +SPLPRN C+ L      CQS      L+S+ L  LM + Y
Sbjct: 195 QSPLPRNDCLQLLGYLKKCQSLEVDGRLDSVTLMVLMAMLY 235


>SB_57455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 301 QAYKGSCLEEWISAYFNTRVFYSESNGSP 387
           ++ KG CL+E   AY N  ++  +SNG+P
Sbjct: 13  ESLKGQCLDE---AYNNVTLYTKDSNGNP 38


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 193  HYYHALNSLHLPFLMILFYHHLYEELPSHLS*FLT*RHLFFNIFCTSF 50
            HY+ ++ + H  F +I+ +H+++  +  H    +   H FF+I    F
Sbjct: 936  HYFFSIITHHY-FFVIITHHYIFSIITHHYFFSIITHHFFFSIITHHF 982


>SB_24572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 324 QARSFIRLIRYFLKTCNRHDRVPEYVLHFRGTDVFAS 214
           + R ++  +RY L+  N  +R P  +    G+D FA+
Sbjct: 214 EGREYLVYVRYELRPLNEQNREPGPMFEREGSDAFAN 250


>SB_13756| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.1)
          Length = 310

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 268 VPITCL*KVPDQAYKGSCLEEWISAYFNTRVFYSESN 378
           +P T L  V   AY G CL   +S Y  +RV  SES+
Sbjct: 224 IPKTTLLHVYSLAYSGLCLRNCVSLY--SRVHISESD 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,559
Number of Sequences: 59808
Number of extensions: 344770
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)