Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0381
(498 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040945-1|AAH40945.1| 334|Homo sapiens PCMTD2 protein protein. 49 1e-05
BC033665-1|AAH33665.1| 361|Homo sapiens protein-L-isoaspartate ... 49 1e-05
BC032670-1|AAH32670.1| 357|Homo sapiens protein-L-isoaspartate ... 49 1e-05
BC032332-1|AAH32332.1| 282|Homo sapiens PCMTD2 protein protein. 49 1e-05
AL121581-4|CAC17006.1| 361|Homo sapiens protein-L-isoaspartate ... 49 1e-05
AK056952-1|BAB71324.1| 357|Homo sapiens protein ( Homo sapiens ... 49 1e-05
AK001745-1|BAA91877.1| 361|Homo sapiens protein ( Homo sapiens ... 48 1e-05
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 30 5.1
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 30 5.1
AK125081-1|BAC86046.1| 144|Homo sapiens protein ( Homo sapiens ... 30 5.1
>BC040945-1|AAH40945.1| 334|Homo sapiens PCMTD2 protein protein.
Length = 334
Score = 48.8 bits (111), Expect = 1e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN+ELIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFR 34
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 278 HVFRKYRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
+ +++ KDLAW++G++H+S P ++ +VMEAL L+F
Sbjct: 41 YYLEEFKENAYKDLAWKHGNIHLSAPCIYS-EVMEALDLQPGLSF 84
>BC033665-1|AAH33665.1| 361|Homo sapiens protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 2
protein.
Length = 361
Score = 48.8 bits (111), Expect = 1e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN+ELIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFR 34
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 278 HVFRKYRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
+ +++ KDLAW++G++H+S P ++ +VMEAL L+F
Sbjct: 41 YYLEEFKENAYKDLAWKHGNIHLSAPCIYS-EVMEALDLQPGLSF 84
>BC032670-1|AAH32670.1| 357|Homo sapiens protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
protein.
Length = 357
Score = 48.8 bits (111), Expect = 1e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN++LIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFR 34
Score = 39.9 bits (89), Expect = 0.005
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 293 YRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
YR KDLAW++G++H+S P ++ +VMEAL+ L+F
Sbjct: 46 YRDNAYKDLAWKHGNIHLSAPCIYS-EVMEALKLQPGLSF 84
>BC032332-1|AAH32332.1| 282|Homo sapiens PCMTD2 protein protein.
Length = 282
Score = 48.8 bits (111), Expect = 1e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN+ELIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFR 34
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 278 HVFRKYRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
+ +++ KDLAW++G++H+S P ++ +VMEAL L+F
Sbjct: 41 YYLEEFKENAYKDLAWKHGNIHLSAPCIYS-EVMEALDLQPGLSF 84
>AL121581-4|CAC17006.1| 361|Homo sapiens protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 2
protein.
Length = 361
Score = 48.8 bits (111), Expect = 1e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN+ELIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFR 34
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 278 HVFRKYRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
+ +++ KDLAW++G++H+S P ++ +VMEAL L+F
Sbjct: 41 YYLEEFKENAYKDLAWKHGNIHLSAPCIYS-EVMEALDLQPGLSF 84
>AK056952-1|BAB71324.1| 357|Homo sapiens protein ( Homo sapiens
cDNA FLJ32390 fis, clone SKMUS1000177, weakly similar to
PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE (EC
2.1.1.77). ).
Length = 357
Score = 48.8 bits (111), Expect = 1e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN++LIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFR 34
Score = 39.9 bits (89), Expect = 0.005
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 293 YRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
YR KDLAW++G++H+S P ++ +VMEAL+ L+F
Sbjct: 46 YRDNAYKDLAWKHGNIHLSAPCIYS-EVMEALKLQPGLSF 84
>AK001745-1|BAA91877.1| 361|Homo sapiens protein ( Homo sapiens
cDNA FLJ10883 fis, clone NT2RP4001946, weakly similar to
PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE (EC
2.1.1.77). ).
Length = 361
Score = 48.4 bits (110), Expect = 1e-05
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +1
Query: 157 MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFR 258
MGGAVS+G DN ELIDNL +YIR+ VE FR
Sbjct: 1 MGGAVSAGEDNEELIDNLKEAQYIRTELVEQAFR 34
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 278 HVFRKYRIRRIKDLAWRNGSLHISTPVSFTVKVMEALRTGNRLNF 412
+ +++ KDLAW++G++H+S P ++ +VMEAL L+F
Sbjct: 41 YYLEEFKENAYKDLAWKHGNIHLSAPCIYS-EVMEALDLQPGLSF 84
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 29.9 bits (64), Expect = 5.1
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -3
Query: 340 QRSIPPGKILYTPDPVLSKDM*SARSSAGIRSPLPRNGCICLSSGCQSTHYYHALNSLHL 161
Q++ PP K TP + M S SSAG R P P C G + HY + HL
Sbjct: 183 QQTQPPAK--RTPQVI--GVMQSQNSSAGNRGPRPLEQVTCYKCG-EKGHYANRCTKGHL 237
Query: 160 PFL 152
FL
Sbjct: 238 AFL 240
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 29.9 bits (64), Expect = 5.1
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -3
Query: 340 QRSIPPGKILYTPDPVLSKDM*SARSSAGIRSPLPRNGCICLSSGCQSTHYYHALNSLHL 161
Q++ PP K P + M S SSAG R P P C G + HY + HL
Sbjct: 183 QQTQPPAK---QRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCG-EKGHYANRCTKGHL 238
Query: 160 PFL 152
FL
Sbjct: 239 AFL 241
>AK125081-1|BAC86046.1| 144|Homo sapiens protein ( Homo sapiens
cDNA FLJ43091 fis, clone COLON2002443. ).
Length = 144
Score = 29.9 bits (64), Expect = 5.1
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +2
Query: 419 PSGSWTRVLEH-PGLGLGKW 475
P GSW RV H P LG G+W
Sbjct: 72 PRGSWLRVTSHPPALGEGRW 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,235,877
Number of Sequences: 237096
Number of extensions: 1811894
Number of successful extensions: 3510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3510
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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