Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0381
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U67949-7|AAD32275.1|  149|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 265 SSAGIRSPLPRNGCICLSSGCQSTHYYHALNSLHLPFLMILFYHHLYEEL 116
           SS  +RS L  +  +CLSS   S    H ++ L   F +I + H   E+L
Sbjct: 106 SSLSVRSLLYYHARLCLSSTHTSLEIDHRISELSAMFDVIGYAHDKLEDL 155


>U67949-7|AAD32275.1|  149|Caenorhabditis elegans Hypothetical
           protein F55A4.7 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 330 FLQARSFIRLIRYFLKTCNRHDR---VPEYVLHFRGTDVFASHQ 208
           FL+ R  IR + Y  K   +H R   +P Y+    G++ FAS +
Sbjct: 19  FLEIRVIIRNMEYAKKQAEKHKRKIILPSYISWEYGSNKFASQK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,194
Number of Sequences: 27780
Number of extensions: 263943
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)