Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0381
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.44 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.44 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 199 IDNLMRGKYIRSAEVENVFRHSIVPITCL*KVPDQ 303
           IDNL + KY+R+   E++    I   TC+ ++ D+
Sbjct: 372 IDNLRKAKYLRACITESL--RLIPTTTCIARILDE 404


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = +1

Query: 151 LKMGGAV--SSGRDNNELIDNLMR---GKYIRSAEVENVFRHSIV 270
           LK GG    S   ++N +  N+++    KY++++++E V +H I+
Sbjct: 322 LKRGGKTLTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDIL 366



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 346 FNTRVFYSESNGS 384
           +N   FYS+SNGS
Sbjct: 138 YNDNYFYSKSNGS 150


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 173 LTAPPIFNDSFLPPPL*RTSLAPQLILDVTSLV 75
           L +PP F+ S  PP + ++ +  + I + T ++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 173 LTAPPIFNDSFLPPPL*RTSLAPQLILDVTSLV 75
           L +PP F+ S  PP + ++ +  + I + T ++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 190 NELIDNLMRG 219
           +EL+DNL+RG
Sbjct: 7   SELLDNLLRG 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,155
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)