Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0381
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    29   1.3  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    29   2.3  
At2g25565.1 68415.m03060 hypothetical protein                          28   3.0  
At5g21950.1 68418.m02549 hydrolase, alpha/beta fold family prote...    27   5.3  
At4g37090.1 68417.m05254 expressed protein                             27   5.3  
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ...    27   7.0  
At1g29750.2 68414.m03638 leucine-rich repeat transmembrane prote...    27   7.0  
At1g29750.1 68414.m03637 leucine-rich repeat transmembrane prote...    27   7.0  

>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 486 GGGSHFPRPNPGCSS 442
           GGG+H+P PNPG  S
Sbjct: 323 GGGAHYPAPNPGMFS 337


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 336 DPFLQARSFIRLIRYFLKTCNRHDRVPEYVLHFR 235
           DP+L A +F +  R+F +T  +  + PE  LH R
Sbjct: 369 DPYLAAPNFPQQNRFFFETTTQKQKHPEVNLHDR 402


>At2g25565.1 68415.m03060 hypothetical protein
          Length = 206

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +1

Query: 262 SIVPITCL*K-----VPDQAYKGSCLEEWISAYFNTRVF 363
           S++P++CL K     V D++    CLE +++ Y N  VF
Sbjct: 129 SVIPVSCLPKEETQEVEDESTCPICLENFLNDYVNDEVF 167


>At5g21950.1 68418.m02549 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461, hydrolase EtbD2
           [Rhodococcus sp.] GI:3273241; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 300

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 GGAVSSGRDNNELIDNLMRGKYIRSAEVE 246
           GG+ SSG + +E+   L  GK +   EVE
Sbjct: 93  GGSSSSGENRSEMFQALCMGKLMEKLEVE 121


>At4g37090.1 68417.m05254 expressed protein
          Length = 186

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 175 SGRDNNELIDNLMRGKYIRSAEVENVFRHSIVPITCL 285
           S  +  E+ID L R K  +S+ +E V    I P  CL
Sbjct: 106 SDSEEEEIIDELPRKKKQKSSGIETVIYKEIPPPECL 142


>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 493

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 483 GGSHFPRPNPGCSSTLVQEPDGQEKLSRFPVLRASIT 373
           G S F +   G  ++  +E  G+EKLSR PV   +IT
Sbjct: 273 GNSFFSKTQVGSETSYEEEHPGKEKLSR-PVHEKTIT 308


>At1g29750.2 68414.m03638 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1021

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 333 PFLQARSFIRLIRYFLKTCNRHDRVPEYVLHFR 235
           PF   ++   L +  LK CN   ++P Y+ H +
Sbjct: 281 PFPSLKNVTGLTKIILKNCNISGQIPTYLSHLK 313


>At1g29750.1 68414.m03637 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1006

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 333 PFLQARSFIRLIRYFLKTCNRHDRVPEYVLHFR 235
           PF   ++   L +  LK CN   ++P Y+ H +
Sbjct: 266 PFPSLKNVTGLTKIILKNCNISGQIPTYLSHLK 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,022
Number of Sequences: 28952
Number of extensions: 247738
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)