Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0380
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.2  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 527 LNGKGFMSPTGILPPGE 477
           L+G GF  P+G++PP E
Sbjct: 137 LSGVGFSIPSGLVPPSE 153


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 454 SSKPQPTTDPFFHTIIN*GVILNCWAKDKLAEPISNS 344
           S  P+ T DP  +T+   G ++ C   DKL  P+S S
Sbjct: 797 SYMPKMTVDPEAYTVTADGKVMECEPVDKL--PLSQS 831


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 502 PRAFSHQVSSSVATPVSSKPQPTTDPF 422
           P + SH  ++ + +  S  P P++DPF
Sbjct: 78  PTSPSHHANTEIDSSSSMLPPPSSDPF 104


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 168 PFLVTQCAAVMMWRCDTSV 112
           PF + Q  +V++W CD+ V
Sbjct: 202 PFYLFQAVSVLIWLCDSFV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,234
Number of Sequences: 5004
Number of extensions: 48507
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)