Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0380
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 30 1.4
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 29 2.5
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665... 27 7.5
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 27 7.5
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 27 7.5
01_06_0297 + 28296742-28297830 27 7.5
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 27 7.5
11_04_0044 + 12716841-12716883,12717630-12717702,12718935-127191... 27 10.0
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 10.0
06_03_0258 - 18847954-18848670 27 10.0
01_06_0660 + 30969879-30970218,30970346-30970514,30971373-309716... 27 10.0
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368... 27 10.0
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 32/137 (23%), Positives = 49/137 (35%)
Frame = +1
Query: 73 PDSESRQQIHMRRNACVTPPHHHGGTLRHKEGLSTTREQGHADRVLGKTQSQNFRRRRAD 252
P + Q+ H R +C H G L R Q + +L ++ + D
Sbjct: 148 PSPVAGQRAHAARWSCSVCQVHCNGEWHFDTHLKGKRHQANTQALLEQSNKNSGNSESHD 207
Query: 253 *FVSQIIIHPEYNASTFSRDVSILELKERVSYSKWVQPACLWPSNSRSHLN*LLYGRRDQ 432
+Q P N S + + KE + W+ AC S L L GRR Q
Sbjct: 208 GTKAQ----PS-NVSHHAEKKKRKKKKEEEEEATWICRACQAVCTCESDLQNHLRGRRHQ 262
Query: 433 WLAGALMRQEWRQKSSP 483
AL ++K++P
Sbjct: 263 LKVQALPEAAKQEKNNP 279
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 348 FEMGSASLSLAQQFKITPQLIIVWKKGSV 434
+E+ A L +A + K+ ++ ++W +GSV
Sbjct: 619 YELARAMLKIADELKLPTKICVIWPQGSV 647
>12_02_0880 +
23965602-23965614,23966150-23966370,23966467-23966503,
23966917-23967100,23967263-23967411,23967515-23967745,
23967850-23968039,23968124-23968433,23968658-23969050
Length = 575
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -3
Query: 369 SWLNPFRIADSFFQLQDADVTTECRRVVFWVYYYLTDELICTPSTEVLRLCFPKYTVSVS 190
++LN F D Q D CR+ + Y L D P+ + R F + + S
Sbjct: 336 TFLNSFWYLDQLGQSAKYDTKVYCRQTLIGGNYGLLDTETFVPNPDYYRQVFLYFALPQS 395
Query: 189 LFTS 178
FT+
Sbjct: 396 CFTT 399
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 412 LYGRRDQWLAGALMRQEWRQKSS---PGGRMPVGDMKPLPLR 528
LYG+ D +L GA+ R +W + G V +MK LR
Sbjct: 96 LYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLR 137
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -2
Query: 508 CHPRAFSHQVSSSVATPVSSKPQPTTDP 425
CH + +H+ + +P +PQP P
Sbjct: 4 CHAKPLTHEEADGACSPPRERPQPPATP 31
>01_06_0297 + 28296742-28297830
Length = 362
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 270 NNTPRIQRVDIQS*RQHLGAERKSQLFEMGSASLS----LAQQFKITPQLIIVWKKGSVV 437
N ++RV I++ R HL LF+ GS + +A P+ ++ GSVV
Sbjct: 162 NTFDELERVAIEALRAHLPVVPVGPLFDTGSGAGEDDDCVAWLDAQPPRSVVFVAFGSVV 221
Query: 438 GWGFDETGVATEEL 479
G DET E L
Sbjct: 222 VIGRDETAEVAEGL 235
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 113 TLVSHRHIITAAHCVTRK 166
TL H ITA HCVTRK
Sbjct: 880 TLRGHTGAITALHCVTRK 897
>11_04_0044 +
12716841-12716883,12717630-12717702,12718935-12719104,
12719996-12720316,12720999-12721195
Length = 267
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 321 LGAERKSQ-LFEMGSASLSLAQQFKITPQLIIVWKKGSV 434
LG K+Q L +MG+ + + +Q+++ I+ W G V
Sbjct: 43 LGRHIKTQRLVDMGTKNRGVMEQYRVYGHFIVEWMNGQV 81
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 140 TAAHCVTRKGSQRLVNKDTLTVYLGKHNLRTSVDGVQIN 256
T HC R G+ +VNK + + +G SVD + N
Sbjct: 189 TPLHCAARAGNHEMVNK-LIGLAIGPSRREESVDSIANN 226
>06_03_0258 - 18847954-18848670
Length = 238
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 52 ALADRLIPDSESRQQIHMRRNACV 123
A + PD E+R++ H RR CV
Sbjct: 29 ACTSKAAPDGETRRRQHQRRRCCV 52
>01_06_0660 +
30969879-30970218,30970346-30970514,30971373-30971635,
30971717-30971864,30972019-30972082,30972225-30972248
Length = 335
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 106 RRNACVTPPHHHGGTLRHKEGLSTTREQGHADRVLGKTQSQNFRRRRA 249
++ C PP HG T+ +G A V+G ++FRR A
Sbjct: 143 KKGCCPPPPPPHGAPATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLA 190
>01_01_0501 -
3682100-3682148,3682263-3682341,3682434-3682511,
3682770-3682866,3682944-3683029,3683310-3683381,
3683451-3683520,3683988-3684110,3684212-3684370,
3684443-3684730,3685652-3685725,3686107-3686344
Length = 470
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 31 PDVRRSMALADRLIPDSESRQQIH-MRRNACVTPPHHHGGTLRHKEGLST 177
PD A A +L P + Q + +RR + + H HG T R G++T
Sbjct: 29 PDAYGDRARAAQLPPRKQQPQVAYALRRASATSSAHLHGATSRSFTGVAT 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,219,846
Number of Sequences: 37544
Number of extensions: 348710
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -