Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0380
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56270.1 68418.m07022 WRKY family transcription factor              28   4.8  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   4.8  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   8.3  
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ...    27   8.3  
At1g12150.1 68414.m01407 expressed protein contains Pfam profile...    27   8.3  

>At5g56270.1 68418.m07022 WRKY family transcription factor
          Length = 687

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 71  YQTQRVDNKYICGGTLVSHRHIITAAHCVTRKGSQRLVN--KDTLTVYLGKHN 223
           Y+ ++   K + G       +  TA  C  RK  +R  +  K  +T Y GKHN
Sbjct: 490 YRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHN 542


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 68  LYQTQRVDNKYICGGTLV 121
           LYQ  R  NK++CGG L+
Sbjct: 11  LYQVWRGSNKFLCGGRLI 28


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 259  RINLHAVDGSSEIVFSQVHGQRVLVHESLRALPCDAMCRRDDVA 128
            +I+ H   GS++++  ++    + + + +R LPC   CR D  A
Sbjct: 2108 KIHGHDPSGSADVL-KELQRSLLWLRDEIRDLPCTYKCRNDAAA 2150


>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 521

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 526 LMARVSCHPRAFSHQVSSSVATPVSSKPQPTTDPFFHTI 410
           ++  ++   R     VS+  A+P++ KPQP   P  H++
Sbjct: 255 IVTNINSATRPVPQPVSAVTASPMARKPQPVIIPQEHSV 293


>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 548

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 124 TPPHHHGGTLRHKEGLSTTREQGHADRVLGKTQSQNF 234
           +PPHHH   +  ++ +STT E   A + L K + Q+F
Sbjct: 140 SPPHHHELDVAREQYISTTVELDAAKQQLNKIR-QSF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,212
Number of Sequences: 28952
Number of extensions: 264968
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)