Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0379
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    55   2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    31   0.19 
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    31   0.19 
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   4.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   7.0  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    26   7.0  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   9.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 42/127 (33%), Positives = 57/127 (44%)
 Frame = -3

Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
           +GN +    + +F P+   LG E+     E T   + K   DI + LY    ++G   M 
Sbjct: 250 IGNERFRAPEALFQPSA--LGLENAGIH-EATYNSIMKCDVDIRKDLYGNVVMSGGTTMY 306

Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
                 MQK I +  P            R+ + +           TFQQMWISKQEYDES
Sbjct: 307 PGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 365

Query: 320 GPSIVHR 300
           GP IV+R
Sbjct: 366 GPGIVYR 372


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 362 FQQMWISKQEYDESG 318
           FQ +W+SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 365 TFQQMWISKQEYDESG 318
           TF Q+WIS+QEY+E G
Sbjct: 406 TFHQLWISRQEYEEHG 421


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 496 NSPPVCKKXFTALAXSTNED*DHCSSREKVLRMDRVDRSSPPXLPSNK 353
           NSP + ++   +L    N   D+   R+  L  D V  SSPP +P+++
Sbjct: 642 NSPQLPERYDFSLELGLNSQLDNEERRDIPLMTDLVMPSSPPMVPADR 689


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 643 FFQPLGFWGMKAXGHPXSPQ 584
           FFQP G++   A G P  PQ
Sbjct: 483 FFQPSGYYSSGAPGAPVQPQ 502


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 430 HCSSREKVLRMDRVD--RSSPPXLPSNKCGSRNKSTTSLAPP 311
           H  S   ++ +D  +  R  PP L  NK  S  ++ T   PP
Sbjct: 5   HTGSNNNIVELDMSELIRPIPPVLDMNKVNSMMETMTGKTPP 46


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 450 RQMKIKIIAPPERKYSVWIG 391
           ++ ++KI A PER ++ W+G
Sbjct: 328 KKNQVKIYASPERMHNAWLG 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,439
Number of Sequences: 5004
Number of extensions: 55859
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)