Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0379
(976 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 52 9e-07
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 51 1e-06
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 50 4e-06
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 50 4e-06
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 49 5e-06
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 48 9e-06
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 48 1e-05
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 46 5e-05
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 46 5e-05
12_02_1282 + 27528159-27529148,27529549-27529614 41 0.002
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 31 1.8
10_03_0024 - 7159841-7159933,7160419-7160517,7160960-7161214 30 3.2
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224... 29 5.6
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 29 7.4
04_04_0560 - 26239712-26239758,26240220-26240763 28 9.8
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 51.6 bits (118), Expect = 9e-07
Identities = 38/111 (34%), Positives = 49/111 (44%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P F+G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSFIGMEAAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWI+K EYDESGPSIVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWIAKAEYDESGPSIVHR 374
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 51.2 bits (117), Expect = 1e-06
Identities = 38/111 (34%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P +G ES E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSMIGMESAGIH-ETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWISK EYDESGP+IVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWISKDEYDESGPAIVHR 374
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 49.6 bits (113), Expect = 4e-06
Identities = 37/111 (33%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P +G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSMIGMEAAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWISK EYDESGP+IVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWISKDEYDESGPAIVHR 374
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWISK EYDESGPSIVHR
Sbjct: 350 TFQQMWISKGEYDESGPSIVHR 371
Score = 46.0 bits (104), Expect = 5e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 306 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 341
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 49.2 bits (112), Expect = 5e-06
Identities = 34/98 (34%), Positives = 43/98 (43%)
Frame = -3
Query: 593 EPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRPIDKXXXXXXXXXR 414
E T + K DI + LY ++G M M K I + P R
Sbjct: 281 ETTYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPER 340
Query: 413 ESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
+ + + TFQQMWISK EYDESGP+IVHR
Sbjct: 341 KYSVWIGGSILASLS-TFQQMWISKAEYDESGPAIVHR 377
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 48.4 bits (110), Expect = 9e-06
Identities = 38/110 (34%), Positives = 46/110 (41%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P +G ES E T + K DI + LY ++G M M K I S P
Sbjct: 265 PSLVGMES-PGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADRMSKEITSLAP 323
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVH 303
R+ + + TFQQMWISK EYDESGP IVH
Sbjct: 324 SSMKVKVIAPPERKYSVWIGGSILASLS-TFQQMWISKGEYDESGPGIVH 372
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 48.0 bits (109), Expect = 1e-05
Identities = 37/110 (33%), Positives = 47/110 (42%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P F+G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 265 PSFIGMEA-PGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAP 323
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVH 303
R+ + + TFQQMWISK EYDESGP IVH
Sbjct: 324 GSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWISKAEYDESGPGIVH 372
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 46.0 bits (104), Expect = 5e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
Score = 41.9 bits (94), Expect = 7e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -3
Query: 356 QMWISKQEYDESGPSIVHR 300
QMWISK EYDESGP+IVHR
Sbjct: 370 QMWISKGEYDESGPAIVHR 388
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 46.0 bits (104), Expect = 5e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
Score = 46.0 bits (104), Expect = 5e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWIS+ EY+ESGP+IVHR
Sbjct: 353 TFQQMWISRAEYEESGPAIVHR 374
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 40.7 bits (91), Expect = 0.002
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = -3
Query: 356 QMWISKQEYDESGPSIVHR 300
+MWI+K EYDESGPSIVHR
Sbjct: 330 KMWIAKAEYDESGPSIVHR 348
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 359 QQMWISKQEYDESGPSIVHR 300
Q ++K +YDE+GPSIVH+
Sbjct: 376 QNQHVTKGDYDETGPSIVHK 395
>10_03_0024 - 7159841-7159933,7160419-7160517,7160960-7161214
Length = 148
Score = 29.9 bits (64), Expect = 3.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 411 KYSVWIGWIDPXLPXYLPTNVDLETRVRRV 322
KYS W GW+D + + P ++ +++R R +
Sbjct: 73 KYSAWRGWMDRAVDGWTPLHLAIQSRNRDI 102
>01_06_0766 -
31820168-31820509,31821898-31822110,31822330-31822473,
31822759-31822797,31822834-31822932,31823024-31823113
Length = 308
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 495 FXXHXGPPGNTGGXVQSPYDVPSHFMKEVYCGLXGXPXAFIPQKPRGWK-KNLLGT 659
F GPP G ++ PS F V CG G P+ PR WK + +GT
Sbjct: 2 FSVRCGPPAFAFGLERAAITHPSKFSTLVVCGARGPR----PRYPRVWKTRKRIGT 53
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 688 IPQWETXKFPVPKRFFFQPLGFWGMKAXGHPXSPQ 584
+P+WE P P +F P ++G HP PQ
Sbjct: 751 MPRWENQTIPGPPVYFPVPPPYFGHYNPYHPFGPQ 785
>04_04_0560 - 26239712-26239758,26240220-26240763
Length = 196
Score = 28.3 bits (60), Expect = 9.8
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 237 PELSSRRGLXEAATRGAFRSTSVYNGGARLVVLLFRDPHLLEGRXGG 377
P+ RR AA G R GG L + PHL G GG
Sbjct: 45 PDFIHRRIAGAAAAGGRARDNQAVGGGVELASIPSGIPHLPAGESGG 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,399,742
Number of Sequences: 37544
Number of extensions: 466599
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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