Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0379
(976 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_56| Best HMM Match : Actin (HMM E-Value=0) 62 7e-10
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 61 1e-09
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 3e-09
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 44 2e-04
SB_35855| Best HMM Match : Fasciclin (HMM E-Value=0.00024) 29 4.3
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 5.7
SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 5.7
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 62.1 bits (144), Expect = 7e-10
Identities = 47/127 (37%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E T + K DI + LY ++G M
Sbjct: 251 IGNERFRCPEAMFQPS--FLGMESAGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGSTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I S P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 62.1 bits (144), Expect = 7e-10
Identities = 47/127 (37%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E T + K DI + LY ++G M
Sbjct: 250 IGNERFRCPEAMFQPS--FLGMESAGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGSTMY 306
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I S P R+ + + TFQQMWISKQEYDES
Sbjct: 307 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 365
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 366 GPSIVHR 372
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 61.3 bits (142), Expect = 1e-09
Identities = 46/127 (36%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E T + K DI + LY ++G M
Sbjct: 250 IGNERFRCPEAMFQPS--FLGMESAGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGSTMF 306
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 307 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 365
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 366 GPSIVHR 372
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 61.3 bits (142), Expect = 1e-09
Identities = 46/127 (36%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E T + K DI + LY ++G M
Sbjct: 251 IGNERFRCPEAMFQPS--FLGMESAGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGSTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 60.1 bits (139), Expect = 3e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E T + K DI + LY ++G M
Sbjct: 213 IGNERFRCPEAMFQPS--FLGMESAGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 269
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 270 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 328
Query: 320 GPSIVHR 300
GP+IVHR
Sbjct: 329 GPAIVHR 335
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 58.4 bits (135), Expect = 8e-09
Identities = 42/111 (37%), Positives = 51/111 (45%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P FLG ES E T + K DI + LY ++G M MQK I + P
Sbjct: 238 PSFLGMES-SGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAP 296
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWISKQEYDESGP+IVHR
Sbjct: 297 STMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDESGPAIVHR 346
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 43.6 bits (98), Expect = 2e-04
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIY-LLHKVXGDIVRTLYXTPGIAGXXPM 504
+GN + + +F P FLG E+ IY + K DI + LY ++G M
Sbjct: 24 IGNERFRCPEAMFQPA--FLGMEA--PGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTM 79
Query: 503 XXEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDE 324
MQK I R+ + + TFQQMWI+K+EY E
Sbjct: 80 FPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLS-TFQQMWIAKEEYHE 138
Query: 323 SGPSIVHR 300
GP IVHR
Sbjct: 139 YGPPIVHR 146
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/90 (35%), Positives = 39/90 (43%)
Frame = -2
Query: 660 RCPKGFFSNPLVFGV*KPXXIPRAHNIPPS*SXRGHRKDFVXXPRYCRXXPXAP*IPRRY 481
RCP+ F P G+ P +N RKD P I R
Sbjct: 30 RCPEAMFQ-PAFLGMEAPGIHEAIYNCIMKCDV-DIRKDLYSNCVLSGGSTMFPGIADRM 87
Query: 480 AKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
K + L+ MK+K+IAPPERKYSVWIG
Sbjct: 88 QKEIAMLA-NASMKVKVIAPPERKYSVWIG 116
>SB_35855| Best HMM Match : Fasciclin (HMM E-Value=0.00024)
Length = 216
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 378 EDRSTRSIRSTFSLEEQXXXXXFVDXARAVNXFLHTGGEFXXHXGPP 518
+ R RS+ S S++ Q V R N L GGEF GPP
Sbjct: 86 QTRKRRSVSSQASVD-QYLRYHMVSCVRMTNETLQRGGEFTSLLGPP 131
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.5 bits (63), Expect = 4.3
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 484 VCK-KXFTALAXSTNED*DHCSSREKVLRMDRVDRSSPPXLPSNKC--GSRNKSTTSLAP 314
VC+ K TA ++ +D D C+S V + + PP P++ S N TTS P
Sbjct: 1222 VCEDKQPTAACQTSIDDGDPCTSSWMVTNCQKSCKRCPPEPPTSSIMQSSSNIPTTSKTP 1281
Query: 313 PLYTEVLLNAPRVAASXSPRRLLN 242
P T L A AA +N
Sbjct: 1282 PSST-CLSTAVSPAAGADSNNAVN 1304
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 427 CSSREKVLRMDRVDRSSPPXLPSNKCGSRNK 335
C+SR DRV S PP P+N SR++
Sbjct: 326 CNSRHHTSICDRVQSSLPPSTPANPGNSRDR 356
>SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1019
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 427 CSSREKVLRMDRVDRSSPPXLPSNKCGSRNK 335
C+SR DRV S PP P+N SR++
Sbjct: 13 CNSRHHTSICDRVQSSLPPSTPANPGNSRDR 43
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 10.0
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = -2
Query: 597 PRAHNIPPS*SXRGHRKDFVXXPRYCRXXPXAP*IPRRYAKXNSQLSPXRQMKIKIIAPP 418
PR PS R R+D R R P PRR K S P R+ + +PP
Sbjct: 884 PRRRRRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPP 943
Query: 417 ERKYS 403
+ S
Sbjct: 944 PMRSS 948
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,066,038
Number of Sequences: 59808
Number of extensions: 468416
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2883962642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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