Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0379
(976 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 61 1e-09
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 59 4e-09
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 59 4e-09
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 59 4e-09
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 59 4e-09
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 59 4e-09
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 59 4e-09
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 59 4e-09
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 58 7e-09
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 42 7e-04
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 33 0.41
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 3.8
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 60.9 bits (141), Expect = 1e-09
Identities = 47/127 (37%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEAMFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P K + S STFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPTMKIKIIAPPERKYSV--WIGGSILASLSTFQQMWISKQEYDES 365
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 366 GPSIVHR 372
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEAMFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEAMFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEAMFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 207 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 263
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 264 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 322
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 323 GPSIVHR 329
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 237 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 293
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 294 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 352
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 353 GPSIVHR 359
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 59.3 bits (137), Expect = 4e-09
Identities = 45/127 (35%), Positives = 59/127 (46%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P+ FLG ES E + + K DI + LY ++G M
Sbjct: 251 VGNERFRCPEALFQPS--FLGMESAGIH-ETSYNSIMKCDIDIRKDLYANTVLSGGTTMY 307
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I + P R+ + + TFQQMWISKQEYDES
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 366
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 367 GPSIVHR 373
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 58.4 bits (135), Expect = 7e-09
Identities = 44/127 (34%), Positives = 56/127 (44%)
Frame = -3
Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
+GN + + +F P F+G E E T + K DI + LY ++G M
Sbjct: 250 IGNERFRCPEVLFQPA--FIGMEGAGIH-ETTYQSIMKCDVDIRKDLYANTVLSGGTSMF 306
Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDES 321
MQK I P R+ + + TFQQMWISKQEYDES
Sbjct: 307 PGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKQEYDES 365
Query: 320 GPSIVHR 300
GPSIVHR
Sbjct: 366 GPSIVHR 372
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 41.9 bits (94), Expect = 7e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMW+SK EYDESG SIV +
Sbjct: 412 TFQQMWVSKAEYDESGKSIVEK 433
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.41
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TF++MW+ K+EY++ G S +H+
Sbjct: 350 TFRKMWLGKKEYEDMGASAMHK 371
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 344 SKQEYDESGPSIVHRSASKRTAGRCLXQP 258
S EY+E+ ++ HRSAS+ +A R + P
Sbjct: 4812 SSHEYEETQKTLRHRSASRESASRTVTAP 4840
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,000
Number of Sequences: 27780
Number of extensions: 359502
Number of successful extensions: 605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -