Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0379
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              44   2e-06
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = -2

Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
           P I  R  K  + L+P   MKIKIIAPPE+KYSVWIG
Sbjct: 82  PGIADRMQKEITALAPST-MKIKIIAPPEKKYSVWIG 117



 Score = 29.9 bits (64), Expect = 0.036
 Identities = 30/113 (26%), Positives = 45/113 (39%)
 Frame = -3

Query: 680 MGNXKIPGAQKVFFPTPWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMX 501
           +GN +    + +F P+  FLG E+     E T   + K   DI + LY    ++G   M 
Sbjct: 25  IGNERFRCPEALFQPS--FLGMEACGIH-ETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 81

Query: 500 XEFPAGMQKXIHSSRPIDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWIS 342
                 MQK I +  P            ++ + +           TFQQMWIS
Sbjct: 82  PGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLS-TFQQMWIS 133


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 408 YSVWIGWIDPXLP 370
           Y VWI  +DP LP
Sbjct: 589 YGVWINCLDPNLP 601


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 433 DHCSSREKVLRMDRVDR 383
           D  SS +++ RMDRVDR
Sbjct: 436 DKMSSMDRMDRMDRVDR 452


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 456  PXRQMKIKIIAPPERKYSVWIGWIDPXLPXYLPTNVDLETRV 331
            P     IK++    +  +++I W+ P  P  + T  +L TRV
Sbjct: 1214 PGSPADIKVVVSSPQ--ALFISWLPPLEPNGIITKYNLYTRV 1253


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 456  PXRQMKIKIIAPPERKYSVWIGWIDPXLPXYLPTNVDLETRV 331
            P     IK++    +  +++I W+ P  P  + T  +L TRV
Sbjct: 1210 PGSPADIKVVVSSPQ--ALFISWLPPLEPNGIITKYNLYTRV 1249


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = -3

Query: 575 LHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
           LH     I+R     PG +   P   +   G+   I S  P
Sbjct: 569 LHAGENTIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEP 609


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 547 GLCTXPPVLPGGPXCXXNSPP 485
           GLC  P    G P    +SPP
Sbjct: 119 GLCEVPESRDGPPSVSLSSPP 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,726
Number of Sequences: 438
Number of extensions: 5284
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)