Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0379
(976 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 50 2e-06
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 50 3e-06
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 50 3e-06
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 49 4e-06
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 49 4e-06
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 49 5e-06
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 49 5e-06
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 49 5e-06
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 45 9e-05
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 44 1e-04
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 41 0.001
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 39 0.004
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 35 0.094
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 32 0.66
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWISK EYDESGPSIVHR
Sbjct: 353 TFQQMWISKSEYDESGPSIVHR 374
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 49.6 bits (113), Expect = 3e-06
Identities = 37/111 (33%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P F+G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSFVGMEAAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWISK EYDE+GP IVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWISKAEYDEAGPGIVHR 374
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 49.6 bits (113), Expect = 3e-06
Identities = 37/111 (33%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P F+G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSFVGMEAAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWISK EYDE+GP IVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWISKAEYDEAGPGIVHR 374
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 49.2 bits (112), Expect = 4e-06
Identities = 37/111 (33%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P +G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSMIGMENAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWI+K EYDESGPSIVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWIAKAEYDESGPSIVHR 374
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 4e-06
Identities = 37/111 (33%), Positives = 48/111 (43%)
Frame = -3
Query: 632 PWFLGYESLRXSXEPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRP 453
P +G E+ E T + K DI + LY ++G M M K I + P
Sbjct: 266 PSMIGMENAGIH-ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAP 324
Query: 452 IDKXXXXXXXXXRESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
R+ + + TFQQMWI+K EYDESGPSIVHR
Sbjct: 325 SSMKIKVVAPPERKYSVWIGGSILASLS-TFQQMWIAKAEYDESGPSIVHR 374
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWI+K EYDESGPSIVHR
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHR 374
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = -2
Query: 486 RYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 314 RMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWI+K EYDESGPSIVHR
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHR 374
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = -2
Query: 486 RYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 314 RMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TFQQMWI+K EYDESGPSIVHR
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHR 374
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 495 IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
I R +K + L+P MKIK++APPERKYSVWIG
Sbjct: 311 IADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = -2
Query: 501 P*IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
P I R K + L+P MKIK++APPERKYSVW+G
Sbjct: 310 PGIADRMNKEINALAPP-SMKIKVVAPPERKYSVWVG 345
Score = 36.7 bits (81), Expect = 0.023
Identities = 28/98 (28%), Positives = 40/98 (40%)
Frame = -3
Query: 593 EPTIYLLHKVXGDIVRTLYXTPGIAGXXPMXXEFPAGMQKXIHSSRPIDKXXXXXXXXXR 414
E T + K DI + LY ++G M M K I++ P R
Sbjct: 279 ETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPER 338
Query: 413 ESTPYXXXXXXXXXXSTFQQMWISKQEYDESGPSIVHR 300
+ + + +F MWI+K EYDE G +IVHR
Sbjct: 339 KYSVWVGGSILASLS-SFAPMWITKAEYDEQGGAIVHR 375
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -2
Query: 444 MKIKIIAPPERKYSVWIG 391
M+IKI+APPERKYSVWIG
Sbjct: 279 MRIKIVAPPERKYSVWIG 296
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVH 303
T++QMWI+K EY+E+GP+IVH
Sbjct: 305 TYEQMWITKAEYEENGPAIVH 325
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
TF QMWI+K EY+E G +IVHR
Sbjct: 342 TFHQMWITKDEYEEHGAAIVHR 363
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 495 IPRRYAKXNSQLSPXRQMKIKIIAPPERKYSVWIG 391
I R K + L P MK+K++ PPE + SVWIG
Sbjct: 300 IKERMTKELNALVPS-SMKVKVVVPPESECSVWIG 333
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 34.7 bits (76), Expect = 0.094
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 365 TFQQMWISKQEYDESGPSIVHR 300
+FQQMW SK EY+E G S + R
Sbjct: 417 SFQQMWFSKSEYEEHGASYIQR 438
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 31.9 bits (69), Expect = 0.66
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 359 QQMWISKQEYDESGPSIVHR 300
Q ++K +YDE+GPS+VHR
Sbjct: 341 QNQHVTKADYDETGPSVVHR 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,243
Number of Sequences: 28952
Number of extensions: 342366
Number of successful extensions: 555
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2363283864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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