Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0377
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 156 3e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 151 6e-38
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 57 2e-09
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.6
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 3.6
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 6.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.3
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 8.3
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 8.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 8.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 156 bits (378), Expect = 3e-39
Identities = 72/92 (78%), Positives = 80/92 (86%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE
Sbjct: 226 NLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHES 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
SV EITN CFEP NQMVKCDPR A ++A C
Sbjct: 286 NSVQEITNQCFEPYNQMVKCDPR-AGRYMATC 316
Score = 134 bits (324), Expect = 9e-33
Identities = 62/103 (60%), Positives = 73/103 (70%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P + +YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
++AK RAVCMLSNTT IAE KRAFVHWY
Sbjct: 367 EIAKVDRAVCMLSNTTSIAE-AWSRLDHKFDLMYSKRAFVHWY 408
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 151 bits (367), Expect = 6e-38
Identities = 70/92 (76%), Positives = 78/92 (84%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE
Sbjct: 230 NLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHES 289
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
SV EITN CFEP NQMVKCDPR ++A C
Sbjct: 290 NSVQEITNQCFEPYNQMVKCDPR-TGRYMATC 320
Score = 138 bits (335), Expect = 4e-34
Identities = 63/103 (61%), Positives = 75/103 (72%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P + +YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+AK RAVCMLSNTT IAE KRAFVHWY
Sbjct: 371 GIAKVNRAVCMLSNTTSIAE-AWSRLDHKFDLMYSKRAFVHWY 412
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + +
Sbjct: 224 DLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQA 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
+SV E+T F+ N MV DPRH
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRH 307
Score = 44.4 bits (100), Expect = 1e-05
Identities = 28/103 (27%), Positives = 46/103 (44%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 305 PRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK----- 359
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DL + + + N+T I E ++AF+HWY
Sbjct: 360 DL---KMSATFIGNSTSIQE-IFRRLGDQFSAMFRRKAFLHWY 398
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.8 bits (131), Expect = 2e-09
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +2
Query: 8 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHE 178
N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 179 QLSVAEITNACFEPANQMVKCDPRHASTWLAV 274
+ +V ++ P NQMV +P S ++++
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNPSKKSCFISI 320
Score = 33.1 bits (72), Expect = 0.031
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +1
Query: 250 SCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 411
SC +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 315 SC-FISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI 367
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 284 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 418
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/67 (26%), Positives = 22/67 (32%)
Frame = +2
Query: 218 PANQMVKCDPRHASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTT 397
P V P S VV P + RP++P P S PV V +
Sbjct: 620 PQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSV 679
Query: 398 SHPPWCP 418
PP P
Sbjct: 680 PQPPAVP 686
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 84 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 230
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 147 QSSLPRRPTMNSFPSPRSQTHASSPPTR 230
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +2
Query: 320 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 406
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Frame = -3
Query: 366 TPVDELDSTLGFDGSDGR--------VHILGYDVTTVQHTASHVLA*RGSHFTIWLAG-S 214
TP + + F GS+G+ V++ + VQH +H L+ F +W+ G S
Sbjct: 365 TPNNAVAMCWSFQGSEGQLGISLSRPVYVTNVTIEHVQHKIAHDLSSAPKDFELWVQGMS 424
Query: 213 KHAFVI 196
FV+
Sbjct: 425 SKMFVL 430
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 81 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 221
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 533 RFGVHEVELVVKGEPKVSAMPVVLDNM 453
+FG+++V+ V K K PV+LDN+
Sbjct: 15 KFGIYDVDDVEKISVKQIVNPVLLDNL 41
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 317 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 412
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 299 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 409
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 439 DLWPSRLRAPRWV 401
D WPS++ P+WV
Sbjct: 157 DSWPSKITLPKWV 169
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 108 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 254
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVL 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,471
Number of Sequences: 5004
Number of extensions: 58136
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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