Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0377
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 164 3e-41
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 164 3e-41
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 164 3e-41
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 163 6e-41
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 163 6e-41
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 158 2e-39
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 156 1e-38
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 79 2e-15
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 79 2e-15
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 79 2e-15
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 79 2e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 79 3e-15
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 79 3e-15
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 79 3e-15
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 78 4e-15
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 78 4e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 46 1e-05
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 46 1e-05
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.027
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.58
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.0
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 4.1
At2g15020.1 68415.m01710 expressed protein and genefinder 28 4.1
At1g68080.1 68414.m07777 expressed protein 28 4.1
At1g62870.1 68414.m07099 expressed protein 28 4.1
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si... 27 7.1
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 7.1
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ... 27 9.4
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 27 9.4
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 27 9.4
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 164 bits (399), Expect = 3e-41
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN+T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNSTSVAE-VFSRIDHKFDLMYAKRAFVHWY 408
Score = 156 bits (378), Expect = 1e-38
Identities = 71/92 (77%), Positives = 82/92 (89%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQ
Sbjct: 226 NLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSVAEITN+ FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGK-YMACC 316
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 164 bits (399), Expect = 3e-41
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN+T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNSTSVAE-VFSRIDHKFDLMYAKRAFVHWY 408
Score = 156 bits (378), Expect = 1e-38
Identities = 71/92 (77%), Positives = 82/92 (89%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQ
Sbjct: 226 NLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSVAEITN+ FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGK-YMACC 316
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 164 bits (399), Expect = 3e-41
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN+T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNSTSVAE-VFSRIDHKFDLMYAKRAFVHWY 408
Score = 156 bits (378), Expect = 1e-38
Identities = 71/92 (77%), Positives = 82/92 (89%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQ
Sbjct: 226 NLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSVAEITN+ FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGK-YMACC 316
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 163 bits (397), Expect = 6e-41
Identities = 74/103 (71%), Positives = 80/103 (77%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNNTAVAE-VFSRIDHKFDLMYAKRAFVHWY 408
Score = 153 bits (370), Expect = 1e-37
Identities = 71/92 (77%), Positives = 79/92 (85%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQ
Sbjct: 226 NLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSV EITNA FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVPEITNAVFEPASMMAKCDPRHGK-YMACC 316
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 163 bits (397), Expect = 6e-41
Identities = 74/103 (71%), Positives = 80/103 (77%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNNTAVAE-VFSRIDHKFDLMYAKRAFVHWY 408
Score = 153 bits (370), Expect = 1e-37
Identities = 71/92 (77%), Positives = 79/92 (85%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQ
Sbjct: 226 NLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSV EITNA FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVPEITNAVFEPASMMAKCDPRHGK-YMACC 316
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 158 bits (384), Expect = 2e-39
Identities = 72/103 (69%), Positives = 78/103 (75%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
DLAK QRAVCM+SN T +AE KRAFVHWY
Sbjct: 367 DLAKVQRAVCMISNNTAVAE-VFSRIDHKFDLMYSKRAFVHWY 408
Score = 145 bits (351), Expect = 2e-35
Identities = 66/92 (71%), Positives = 76/92 (82%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ
Sbjct: 226 NLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
SV EIT + FEP+N M KCDPRH ++A C
Sbjct: 286 FSVPEITTSVFEPSNMMAKCDPRHGK-YMACC 316
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 156 bits (378), Expect = 1e-38
Identities = 71/92 (77%), Positives = 82/92 (89%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
NLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQ
Sbjct: 226 NLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQ 285
Query: 182 LSVAEITNACFEPANQMVKCDPRHASTWLAVC 277
LSVAEITN+ FEPA+ M KCDPRH ++A C
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGK-YMACC 316
Score = 154 bits (374), Expect = 4e-38
Identities = 67/80 (83%), Positives = 73/80 (91%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P KYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 424 DLAKGQRAVCMLSNTTGIAE 483
DLAK QRAVCM+SN+T +AE
Sbjct: 367 DLAKVQRAVCMISNSTSVAE 386
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSA 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
LSV E+T ++ N M DPRH
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPRH 307
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/103 (24%), Positives = 44/103 (42%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + I+ K + FV+W P K + + P G
Sbjct: 305 PRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV----CDIAPKG 360
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 361 ----LKMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSA 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
LSV E+T ++ N M DPRH
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPRH 307
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/103 (23%), Positives = 44/103 (42%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + PT +
Sbjct: 305 PRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGL--- 361
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 362 -----KMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 225 DLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYIS 284
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 285 LTVPELTQQMWDAKNMMCAADPRH 308
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/103 (25%), Positives = 45/103 (43%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ I ++ K + FV+W P K + PPT +
Sbjct: 306 PRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGI--- 362
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 363 -----KMASTFVGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 399
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 225 DLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYIS 284
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 285 LTVPELTQQMWDSKNMMCAADPRH 308
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ I I+ K + FV+W P K + PP
Sbjct: 306 PRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPP------ 359
Query: 424 DLAKG-QRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
KG + A + N+T I E ++AF+HWY
Sbjct: 360 ---KGLKMAATFVGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 399
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRS 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPRH 307
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/103 (24%), Positives = 45/103 (43%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + PPT +
Sbjct: 305 PRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--- 361
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 362 -----KMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRS 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPRH 307
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/103 (24%), Positives = 45/103 (43%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + PPT +
Sbjct: 305 PRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--- 361
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 362 -----KMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRN 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPRH 307
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/103 (24%), Positives = 45/103 (43%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + PPT +
Sbjct: 305 PRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--- 361
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 362 -----KMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRA 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPRH 307
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/103 (24%), Positives = 45/103 (43%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + PPT +
Sbjct: 305 PRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--- 361
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
+ A + N+T I E ++AF+HWY
Sbjct: 362 -----KMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 2 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 181
+LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 224 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRA 283
Query: 182 LSVAEITNACFEPANQMVKCDPRH 253
L+V E+T ++ N M DPRH
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPRH 307
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/103 (23%), Positives = 43/103 (41%)
Frame = +1
Query: 244 PPSCKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 423
P +Y+ ++RG + K+V+ + ++ K + FV+W P K + + P G
Sbjct: 305 PRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV----CDIAPRG 360
Query: 424 DLAKGQRAVCMLSNTTGIAEXXXXXXXXXXXXXXXKRAFVHWY 552
A + N+T I E ++AF+HWY
Sbjct: 361 ----LSMASTFIGNSTSIQE-MFRRVSEQFTAMFRRKAFLHWY 398
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQL 184
N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + +
Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKT 288
Query: 185 SVAEITNACFEPANQMVKCDPRH 253
+V ++ + N MV R+
Sbjct: 289 TVLDVMRRLLQTKNIMVSSYARN 311
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 256 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 411
KY++ + +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYV 369
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQL 184
N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + +
Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKT 288
Query: 185 SVAEITNACFEPANQMVKCDPRH 253
+V ++ + N MV R+
Sbjct: 289 TVLDVMRRLLQTKNIMVSSYARN 311
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/52 (25%), Positives = 31/52 (59%)
Frame = +1
Query: 256 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 411
KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYV 369
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 34 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 168
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.58
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 68 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 208
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 399 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 295
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 426
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 62 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 238
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 357 DELDSTLGFDGSDGRVHILGYDVTTVQ 277
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 93 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 224
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase, Zea mays,
PIR2:JQ1329; contains non-consensus (GC) donor splice
site at intron 4
Length = 1050
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 483 FGDAGGVGQHADGTLTFGQVASGHHGGWLVVDTDLETGWTPVDELDST 340
+ DAG V H G L V +GH G + L+ G +++D T
Sbjct: 337 YADAGEVAAHLAGALNVPMVLTGHSLGRNKFEQLLQQGRITREDIDRT 384
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 78 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 254
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 255 QVHGLLYAVP 284
G + + P
Sbjct: 142 VSEGGVISSP 151
>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
similarity to importin 4 GI:18700635 from [Homo sapiens]
Length = 1048
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 488 WARL*PQVRPHVRQSVL 538
WA+L PQ++ HV+QS++
Sbjct: 68 WAKLSPQLKQHVKQSLI 84
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 108 LTPVSTSHWSRTRQS----SLPRRPTMNSFPSPRSQTHASSPPTR 230
LTP T S++++S + P +SF S SQ+H S+P +
Sbjct: 270 LTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVK 314
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 108 LTPVSTSHWSRTRQS----SLPRRPTMNSFPSPRSQTHASSPPTR 230
LTP T S++++S + P +SF S SQ+H S+P +
Sbjct: 357 LTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVK 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,412
Number of Sequences: 28952
Number of extensions: 341903
Number of successful extensions: 1211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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