Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0376
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 0.49
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 0.86
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 1.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 2.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 2.6
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 26 3.5
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 3.5
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.5
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 26 4.6
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 6.1
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 25 8.0
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 29.1 bits (62), Expect = 0.49
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 194 KDYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLAKEVDPD 331
KD+NY + A V DVD ++SKL + EL LA +++ +
Sbjct: 362 KDFNYFSATDVPSAEHVDSVLKDVDVIMSKLGEGELGQLAADINAE 407
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 0.86
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 380 DPTGPVESAKKLIEHINKQALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARRPRNKI 559
D E ++I+H + L P + E+ + QG + D FPG+SA +NKI
Sbjct: 43 DQKAAAEEKFQIIQHAY-EVLSDPSKKEI--YDNFGEQGLKTDWNVGFPGKSAEELKNKI 99
Query: 560 TDPI 571
+ I
Sbjct: 100 REQI 103
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 538 RTFSRKGGAGIHFLPLTTPGT 476
R R+GG +H LPL +P T
Sbjct: 23 RKIGRRGGRSMHVLPLASPST 43
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 263 VDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKL 415
V++ +++ E L ++ P +PP Q N P+GP+ S+ L
Sbjct: 916 VEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGPITSSTLL 966
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 424 HQQAST-GDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEEQD 558
H Q++T + + QS+SSP + + S SGRK TP+ ++
Sbjct: 401 HSQSATFNNTQDVNRQSVSSPKVVSSSSVTGSGASGRKVYTPQSKN 446
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 392 PVESAKKLIEHINKQALETPDRPEVKAF 475
PVESA +EH+ L T + E+K F
Sbjct: 219 PVESACNYLEHLKSPELSTYEVSELKKF 246
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 380 DPTGPVES--AKKLIEHINKQALETPDRPEV 466
DP P S A K ++HI + L P RP++
Sbjct: 180 DPNNPFGSTFANKFLDHIPAEPLPLPARPQI 210
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 3.5
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +2
Query: 287 TQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKLIEHINKQALETPDRPEV 466
TQE L L PD + L S NN DP P +A + + + A+E P ++
Sbjct: 101 TQELLESLGISAIPDLSNLGASNNNNSGLTFDPNDPSAAAFYIAQQV--AAIEHPPPRKM 158
Query: 467 KAFRPRRCQGQE 502
+ R + +E
Sbjct: 159 TSSEKTRSENRE 170
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 452 RGSPVLAC*CALSVSLRIQRDRWDPSSKRSCYAVTVEENCRQDQP 318
RG+P +A ALSV++ ++ D +K Y + E+ +Q +P
Sbjct: 46 RGAPAIAIVAALSVAVGLKHLSEDADAKE--YVINSFEHLKQSRP 88
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 5 HA-ATRRR-LK---ITAFLSVPPQIPRASLVASATRNHXXXXXXXXXXXXHPQGGPHQPQ 169
HA +TR+R LK ++ + S PQ+ +S+ +AT + P G HQP
Sbjct: 206 HAPSTRQRDLKSSILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPA 265
Query: 170 DRG 178
G
Sbjct: 266 TTG 268
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 8.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 191 NKDY-NYDDPGQIVRAGVVYIRQV---DVDELLSKLTQEELTMLAKEVDPDDNF 340
NKDY + +++ YI + D++ LS L +EEL +E+D ++N+
Sbjct: 49 NKDYVGQQEEEELLYDQPSYIEEEEDPDLEAYLSDLEREELEHSLEELDEENNY 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,406
Number of Sequences: 5004
Number of extensions: 45066
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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