Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0376
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 33 0.16
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 31 0.88
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 4.7
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 6.2
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 27 8.2
11_01_0385 + 2915532-2916482 27 8.2
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.2
03_05_0120 - 21011955-21012002,21012211-21012578,21012650-21012752 27 8.2
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 27 8.2
01_07_0382 + 43188478-43190919 27 8.2
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264 27 8.2
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 429 TSKHWRPPTGPRSKP-FVPGVVRGKKWIPAPP 521
T+K +RPP PR KP F P + W P+PP
Sbjct: 105 TAKPYRPPPPPRKKPQFQPPPQPPRAWDPSPP 136
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 406 KETDRAHQQASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEEQDHRSDSFR 579
+E+ R HQQ R S++S +S F PP R +P + DH S R
Sbjct: 76 RESQRHHQQPPGSHQHHRRSGSVASDP-GDFQSKFAPPPQFRPSPSPSQYDHHSSDHR 132
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 392 PVESAKKLIEHINKQALETPDRPEVKAFRPRRCQGQEV 505
P + ++KL+ K E + PEVK ++PR+ G EV
Sbjct: 1571 PDDYSEKLLSQ--KNGTENLELPEVKDYQPRKVPGDEV 1606
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 442 GDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEEQ 555
G P PA G S SS +L R PP GR+ ++Q
Sbjct: 3 GPPGPAPGTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQ 40
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1
Query: 483 RGRKALTSGRSGVSSA 436
RGRK + SGRSGV+SA
Sbjct: 894 RGRKEVLSGRSGVASA 909
>11_01_0385 + 2915532-2916482
Length = 316
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +3
Query: 381 IPPVPLNPQRN**STSTSKHWRP-PTGPRSKPFVPGVVR-GKKWIPAPPF 524
+PP P +P W P P P P P G +W P PPF
Sbjct: 225 LPPFPSHPPPTPAWPQPGNKWPPLPPFPSHPPPTPAWPHPGNQWPPLPPF 274
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 415 DRAHQQASTGDPRPARG---QSLSSPALSGARSGFRPPLSGRKCATPE 549
D A QAS PARG +S ++P SG R + S A P+
Sbjct: 25 DEAEPQASAASSPPARGAADRSHTTPPSSGRRRRYSASASSAAAARPD 72
>03_05_0120 - 21011955-21012002,21012211-21012578,21012650-21012752
Length = 172
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 389 GPVESAKKLIEHINKQALETPDRPEVKAFRPR 484
GP+E + + EH+ K +E D P +A PR
Sbjct: 96 GPMEDEEGIGEHVRKGIVERVDGPGSRAKEPR 127
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 578 RKESDR*SCSSGVAHFLPERGGRNPLLAPDN 486
++E + SC +G HF+PE G + P+N
Sbjct: 608 KEEEEGASCHAGCRHFVPEIGPWSEATIPEN 638
>01_07_0382 + 43188478-43190919
Length = 813
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 5 HAATRRRLKITAFLSVPP-QIPRASLVASAT 94
H A RR TA L PP Q PRAS ASA+
Sbjct: 29 HHAARRLSSTTACLHPPPLQPPRASASASAS 59
>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
Length = 336
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 357 VTTTLARRIPPVPLNPQRN**STSTSKHWRPPTGPRSKPFVPGVVRGK 500
V T +A PVP T++H PTG KP PG G+
Sbjct: 213 VVTYMAEHCHPVPTQLNA---LAGTTRHKSAPTGDDDKPTSPGPAAGR 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,966
Number of Sequences: 37544
Number of extensions: 404274
Number of successful extensions: 1402
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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