Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0376
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 30 1.2
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 28 4.8
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 28 4.8
SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43) 28 6.3
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 27 8.4
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 418 RAHQQASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEEQDHRSDSFR 579
R +++ + P P R L P A + P + RK A+PEEQD + + R
Sbjct: 932 RRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRARRKVASPEEQDRQKSNGR 985
>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
Length = 641
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 377 KDPTGPVESAKKLIEHINKQALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARR 544
+ P S + + H N Q ++ PDRP+ + P R QEV + P P E R
Sbjct: 29 RTPCECASSHESICRH-NLQTIDKPDRPQEVTYTPDR--PQEVTNTPDRPQEETNR 81
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 385 HRSR*IRKETDRAHQQASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEE 552
H+ R K T R HQQ + + + Q ++ + +PP G+ TPEE
Sbjct: 382 HQKRARTKNTRRRHQQKPPEEGKNKKHQKKATTKNTRRGQEQKPPEEGKNKKTPEE 437
>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
Length = 1060
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 439 TGDPRPARGQSLSSPALSGA-RSGFRPPLSGRKCAT 543
TGD + + S P S RSG RPP GRK A+
Sbjct: 595 TGDEDEVQSKRGSRPPTSSRPRSGKRPPSGGRKAAS 630
>SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 448 PRPARGQSLSSPALSGARSGFRPP 519
PRPARGQ+L P G ++ RPP
Sbjct: 29 PRPARGQTL--PRAPGGQNPLRPP 50
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 448 PRPARGQSLSSPALSGARSGFRPP 519
PRPARGQ+L P G ++ RPP
Sbjct: 586 PRPARGQTL--PRAPGGQNPLRPP 607
>SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 212 DPGQIVRAGVVYIRQVDVDELLSKLT----QEELTMLAKEVDPDDNFLPPSQRNNYAC 373
D +IVR VY++ VDE + KLT L+ DP +N + P+ +C
Sbjct: 466 DLAEIVRRSSVYVKAFPVDESVEKLTVYVASSRLSSKVSLRDPSNNPVAPTMTLYGSC 523
>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
Length = 774
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 460 GPVGGLQCLLVDVLYQFLCGFNGTGGILL 374
GP G ++V L+Q GF+G G LL
Sbjct: 20 GPSGRESAIMVSSLFQIFIGFSGVMGFLL 48
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Frame = +2
Query: 260 DVDELLSKLTQEEL-TMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKLIEHINKQ 436
D D+ S+ Q L T +K D D P Q + P + A + + K
Sbjct: 64 DQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQAARPRQANRKT 123
Query: 437 ALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARRPR 550
P + +A RPR+ + S P + A RPR
Sbjct: 124 KTSKPQDQDKQAARPRQASRKTKTSKPQDQDKQAARPR 161
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 403 RKETDRAHQQASTGDPRPARG--QSLSSPALSGARSGFRPPLSGRK 534
RK +P P +S +P L+G +S PPL+GRK
Sbjct: 273 RKSNPNPPLNGRKSNPNPPHNGRKSNPNPPLNGRKSNPNPPLNGRK 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,394
Number of Sequences: 59808
Number of extensions: 400337
Number of successful extensions: 1285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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