Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0376
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 60 8e-10
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 57 1e-08
AC025716-14|AAK39603.1| 227|Caenorhabditis elegans Hypothetical... 29 3.2
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 7.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 7.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 7.3
Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 27 9.6
Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 27 9.6
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 27 9.6
Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 27 9.6
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 27 9.6
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 27 9.6
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 27 9.6
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 27 9.6
U39851-8|AAF99879.1| 937|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 27 9.6
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 27 9.6
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 60.5 bits (140), Expect = 8e-10
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = +2
Query: 215 PGQIVRAGVVYIRQVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGP 394
P ++ G+ + D++ LLS L+ +EL L + DPD++ LPPSQR K+PTGP
Sbjct: 29 PSKVYNKGLKDLEDNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP 88
Query: 395 VESAKKLIEHINKQALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARRPRN-KITDPI 571
+ L++ + +A D +V + P + +G+ DS G ++ P N K+ PI
Sbjct: 89 YK-RDNLLKFLEDKAKTEKDWEDVCPYTPGQKRGKVYDSD---SGRNSEEPENGKMEMPI 144
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Frame = +2
Query: 248 IRQVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKLIEHI 427
++ D++ LLS L+ +EL L + DPD++ LPPSQR K+PTGP + L++ +
Sbjct: 49 LKDNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGPYK-RDNLLKFL 107
Query: 428 NKQALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARRPRN-KITDPI 571
+A D +V + P + +G+ DS G ++ P N K+ PI
Sbjct: 108 EDKAKTEKDWEDVCPYTPGQKRGKVYDSD---SGRNSEEPENGKMEMPI 153
>AC025716-14|AAK39603.1| 227|Caenorhabditis elegans Hypothetical
protein Y39G10AR.16 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 376 EGSHRSR*IRKETDRAHQQASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEE 552
EGS RS ++KE ++ ++ G R AR + SS + PP+ PE+
Sbjct: 101 EGSQRSARLKKE-QKSEKKKKEGSQRSARSKKASSEKPEVEKKPEEPPVEDEAKTPPEK 158
>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
protein R134.2 protein.
Length = 1118
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 197 DYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLA 313
DY D G +VRAG+ +I+ VD ++ + L +++
Sbjct: 84 DYTECDQGSVVRAGIEFIKTHKVDVIIGPPCAQALRVMS 122
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 430 QASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCA 540
Q S G P +R QS+ +P +S + +P SGR+ A
Sbjct: 649 QTSHGPPLLSRSQSMHTPMISPNFNASQPSTSGRQPA 685
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 430 QASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCA 540
Q S G P +R QS+ +P +S + +P SGR+ A
Sbjct: 649 QTSHGPPLLSRSQSMHTPMISPNFNASQPSTSGRQPA 685
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +2
Query: 251 RQVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKLIEHIN 430
+Q++ + ++ +++++ L K+ + D+F+ SQ++ +PT P ES + I +N
Sbjct: 12928 KQIETETVVDDKSKKKV--LKKKTEKSDSFI--SQKSETPPVVEPTKPAESEAQKIAEVN 12983
Query: 431 K 433
K
Sbjct: 12984 K 12984
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +2
Query: 251 RQVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYAC*KDPTGPVESAKKLIEHIN 430
+Q++ + ++ +++++ L K+ + D+F+ SQ++ +PT P ES + I +N
Sbjct: 12928 KQIETETVVDDKSKKKV--LKKKTEKSDSFI--SQKSETPPVVEPTKPAESEAQKIAEVN 12983
Query: 431 K 433
K
Sbjct: 12984 K 12984
>Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 308 ITKRYDPPISISPPPQRNNYS 328
>Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 488 ITKRYDPPISISPPPQRNNYS 508
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 585 ITKRYDPPISISPPPQRNNYS 605
>Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 505 ITKRYDPPISISPPPQRNNYS 525
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 560 ITKRYDPPISISPPPQRNNYS 580
>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 197 DYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLA 313
DY D G +VRAG+ +I+ VD ++ + L +++
Sbjct: 81 DYTECDLGSVVRAGMEFIKTHKVDVIIGPPCAQALRLMS 119
>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 197 DYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLA 313
DY D G +VRAG+ +I+ VD ++ + L +++
Sbjct: 81 DYTECDLGSVVRAGMEFIKTHKVDVIIGPPCAQALRLMS 119
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 155 PHQPQDRGEIILNKDYNYDDPGQIVRAGVVYIRQVDVDELL 277
PH D G I Y + ++V GV YI +DELL
Sbjct: 42 PHTHDDLGWIKTVDQYFWGAKPELVPVGVQYIYNTVIDELL 82
>U39851-8|AAF99879.1| 937|Caenorhabditis elegans Hypothetical
protein C23G10.8 protein.
Length = 937
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 382 SHRSR*IRKETDRAHQQASTGDPRPARGQSLSSPALSGARSGFRPPLSGRKCATPEEQDH 561
+HR + IR+ ++A T P + G S+S+P + RP S + A E+D
Sbjct: 757 THRLQSIRRSLADTAERAETEGPSSSTGPSISAPPIPS-----RPGHSNYRMAAGRERDR 811
Query: 562 RSD 570
+
Sbjct: 812 EEE 814
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 585 ITKRYDPPISISPPPQRNNYS 605
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 308 LAKEVDPDDNFLPPSQRNNYA 370
+ K DP + PP QRNNY+
Sbjct: 560 ITKRYDPPISISPPPQRNNYS 580
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,024
Number of Sequences: 27780
Number of extensions: 287919
Number of successful extensions: 1014
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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