Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0376
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 463 GQSLSSPALSGARSGFRPPLSGRK 534
           G SLS  A++G R+ F  PLS R+
Sbjct: 260 GMSLSPIAVNGYRTLFFHPLSSRR 283


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 256 SGRGRAPVQAHSRRTDHAGKGG 321
           S  G +PV +HS    H G GG
Sbjct: 69  SSSGDSPVSSHSSNGIHTGFGG 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +1

Query: 244 LHTTSGRGRAPV-QAHSRRTDHAGKGG*S*RQFSSTVTA*QLRLLEGSHRSR*IRKETDR 420
           LH TS   R+P  QA + +              SST +     L+EG   +    K TD 
Sbjct: 673 LHLTSPPARSPSSQAQASQCPQTAS------LLSSTHSTLARSLMEGPRMTAEQLKRTDI 726

Query: 421 AHQQASTGDPRPARGQSLSSPA 486
            H     G+  P    +  SPA
Sbjct: 727 IHNYIMRGEASPRSPNASPSPA 748


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 170 DRGEIILNKDYNYDD 214
           +R + I+N D+N+DD
Sbjct: 381 NRMQKIVNDDFNFDD 395


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 514 AGIHFLPLTTPGTKGF 467
           +G H+  LT  G KGF
Sbjct: 195 SGYHYNALTCEGCKGF 210


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 490 SGARSGFRPPLSGRKCATPEEQDHRS 567
           SGA +  RPP S        E +H S
Sbjct: 265 SGAAASDRPPASASSNEHEAESEHTS 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,005
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)