Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0376
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01280.1 68418.m00037 expressed protein 29 1.7
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 29 1.7
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 29 1.7
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 29 3.0
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 27 6.8
At1g24706.1 68414.m03104 expressed protein 27 6.8
At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family... 27 9.0
At1g70810.1 68414.m08168 C2 domain-containing protein similar to... 27 9.0
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = +3
Query: 216 PAKLYGRELSTYDKWTWTSSCPSSLKKN*PCWQRRLILTTIFFHRHSVTTTLARRIPPVP 395
P+ R ST + T TSS +S ++ W R + R ++T A R P
Sbjct: 111 PSTPTSRATSTTTRATLTSSSTTSSTRS---WSRPSSSSGTGTSRVTLTAARATR-PTTS 166
Query: 396 LNPQRN**STSTSKHWRPPTGPRSKP 473
+ Q +TST + RP + P SKP
Sbjct: 167 TDQQTTGSATSTRSNNRPMSAPNSKP 192
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 164 PQDRGEIILNKDYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLAKEVDPDDNFL 343
PQ+ G +LN + + D G +V Q+ V+ + + + + T AKE+ PDD
Sbjct: 121 PQETGYFVLNDMFRFIDEGTVVHG-----NQIPVNNVQAPVNTYQDTAAAKEI-PDDFVQ 174
Query: 344 PPSQRNNYA 370
+ N+A
Sbjct: 175 EKYVQENHA 183
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 386 TGPVESAKKLIEHINKQALETPDRPEVKAFRPR 484
T VES + ++ +Q L+TP++P+ K RP+
Sbjct: 93 TEEVESLSSVSNNVAEQILKTPEKPKRKKHRPK 125
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 468 KPFVPGVVRGKKWIPAPPFREKVRDARG 551
+ F P +V G +W P PF+ + RG
Sbjct: 463 RAFSPSIVSGSQWRPGSPFQSQNETVRG 490
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 398 ESAKKLIEHINKQALETPDRPEVKAFRPRRCQGQEVDSGPPFPGESARRPRNKITDPIPS 577
+ A + H+N A P RP V A P + PP P +A P N P PS
Sbjct: 301 QQAVQTNRHMNSTA---PPRPSVTAAEPMN------SAAPPRPSVTAAEPMNSTAPPRPS 351
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 234 RELSTYDKWTWTSSCPSSLKKN*PCWQRRLILTTIFFHRHSV 359
R LS +K TW SSCP +LK N QR + F SV
Sbjct: 995 RRLSR-EKDTWLSSCPDTLKINMEFLQRCIFPRCTFSMADSV 1035
>At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family members At5g09530,
At5g09520, At1g44222 [Arabidopsis thaliana]
Length = 144
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 398 ESAKKLIEHINKQALETPDRPEVKA-FRPRRCQGQEVDSGPPFPGE 532
E KK+ E+ + E P+ PE+ + P + E+ P PGE
Sbjct: 41 EEVKKVPEYTEPEEPEVPEEPELPSPEEPEIPEEPEIPEEPEVPGE 86
>At1g70810.1 68414.m08168 C2 domain-containing protein similar to
zinc finger and C2 domain protein GI:9957238 from
[Arabidopsis thaliana]
Length = 165
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 173 RGEIILNKDYNYDDPGQIVRAGVVYIRQVDVDELLSKLTQEELTMLAKEVDPDDNFLPPS 352
RG + +D DP ++ G ++ V+ + EELT+ + D N +
Sbjct: 14 RGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLALRHPDEPVNLI-VY 72
Query: 353 QRNNYAC*KDPTGPVESAKKLIEHINKQAL-ETPDRPEVKAFRPRR 487
++ + D G + K ++K L E PD E+K P R
Sbjct: 73 DKDTFTS-HDKMGDAKIDIKPFLEVHKMGLQELPDGTEIKRVVPNR 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,454
Number of Sequences: 28952
Number of extensions: 280557
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -