Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0375
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   1.9  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   7.6  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   7.6  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   7.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.6  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -2

Query: 504 NKKKHSNVI*LSYT*NVWSSLCCVLRSEGR*PLRSTFVWTMFLQTFLSPNILYGVLNAFM 325
           N K  S  +   Y  +VW  L   + S+   P+   F+  M    F+S N+   ++   +
Sbjct: 134 NGKPISQELFTKYFFDVWERLENAVGSDSEKPMYFRFLTLMAWHVFISENVDAAIIEVGI 193

Query: 324 GKVYHYIYI*RKP 286
           G  Y    +  KP
Sbjct: 194 GGEYDSTNLIEKP 206


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 387 SKQKCSVKVTDPQNEEHNTRRTIHFMCKIIK 479
           SK+K S+K     +++H+ +RT   +C+ +K
Sbjct: 15  SKKKGSIKQLAFNSKKHDPKRTYALVCETLK 45


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 470 LTHKMYGPPCVVFFVLRVGDLYGALLFGLCSSRPSC 363
           L  K  G  C +F++ ++GD Y   L G C +  +C
Sbjct: 336 LREKDVGTGCGLFYIDKLGDEYYTFLTG-CKNPKAC 370


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 390 WTMFLQTFLSPNILYGVLNAFMGKVYHYI 304
           W     + +SP I+Y V +AF G   HYI
Sbjct: 11  WNPVTVSLVSPVIIYWVASAFFG-FLHYI 38


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 317 TLPMKAFNTPYNIFGDRKVWR 379
           T+  + +   YN F DR+VWR
Sbjct: 522 TVNRRDYTNVYNSFHDRRVWR 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,665
Number of Sequences: 5004
Number of extensions: 45632
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)