Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0375
         (562 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   1.7  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   9.0  

>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
 Frame = +3

Query: 276 ESMKACAKYKYNDTPYP*RRLIRHTIYLETGRSGGT*SKQKC--SVKVTDPQNEEHNTRR 449
           E  K    +K   T Y  R   R  +  + G SG    KQ C  SVK  D      N   
Sbjct: 273 EEQKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGH--KKQACTNSVKCLDCGTRSQNLHA 330

Query: 450 TIHFMC 467
           T  +MC
Sbjct: 331 TGSYMC 336


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 488 ECFFLLPLKADRRIRPTLMVSGAP 559
           E F +  L+A R +RP  +VSG P
Sbjct: 207 EGFDVKALRAFRVLRPLRLVSGVP 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,656
Number of Sequences: 2352
Number of extensions: 12087
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)