Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0375
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H...    27   7.0  
AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchang...    27   7.0  
AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchang...    27   7.0  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    27   9.2  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    27   9.2  

>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 338  NTPYNIFGDRKVWRNIVQTKVLRKGHRPSERRTQHKEDHTFYV 466
            N  Y IF D    +N+  T V+ K H P  RR        FYV
Sbjct: 2643 NDDYQIFTDTNS-QNVKHTNVMIKRHIPGVRRIDSHPHAPFYV 2684


>AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H
           exchanger isoform 3 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = -3

Query: 431 FVLRVGDLYGALLFGLCSSRPSCLQIYCMAY*TPSWVRCIIIFIFSASLHAFRSAPSNTH 252
           F+L  G L GA+ +GL  S P+ +Q   M   T   V    +F+   ++    +  +   
Sbjct: 390 FILSYGGLRGAIAYGLVVSIPASIQAKPMFITTTICVIYFTVFLQGITIRPLVNCLNVKK 449

Query: 251 DDHDHSVKSDTIEKK 207
            +H  +   +++  K
Sbjct: 450 KEHREATMVESVYNK 464


>AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform b protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = -3

Query: 431 FVLRVGDLYGALLFGLCSSRPSCLQIYCMAY*TPSWVRCIIIFIFSASLHAFRSAPSNTH 252
           F+L  G L GA+ +GL  S P+ +Q   M   T   V    +F+   ++    +  +   
Sbjct: 371 FILSYGGLRGAIAYGLVVSIPASIQAKPMFITTTICVIYFTVFLQGITIRPLVNCLNVKK 430

Query: 251 DDHDHSVKSDTIEKK 207
            +H  +   +++  K
Sbjct: 431 KEHREATMVESVYNK 445


>AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform a protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = -3

Query: 431 FVLRVGDLYGALLFGLCSSRPSCLQIYCMAY*TPSWVRCIIIFIFSASLHAFRSAPSNTH 252
           F+L  G L GA+ +GL  S P+ +Q   M   T   V    +F+   ++    +  +   
Sbjct: 390 FILSYGGLRGAIAYGLVVSIPASIQAKPMFITTTICVIYFTVFLQGITIRPLVNCLNVKK 449

Query: 251 DDHDHSVKSDTIEKK 207
            +H  +   +++  K
Sbjct: 450 KEHREATMVESVYNK 464


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 249 VMSVGRGRPESMKACAKYKYNDTPYP*RRLIRHTIYLET 365
           V  V RG+P +++ C  +  +D P   RR +    Y  T
Sbjct: 283 VQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRT 321


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 249 VMSVGRGRPESMKACAKYKYNDTPYP*RRLIRHTIYLET 365
           V  V RG+P +++ C  +  +D P   RR +    Y  T
Sbjct: 283 VQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRT 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,821
Number of Sequences: 27780
Number of extensions: 261318
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)