Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0375
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    29   1.6  
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    29   2.1  
At2g03500.1 68415.m00309 myb family transcription factor contain...    28   3.7  
At5g04895.1 68418.m00514 helicase domain-containing protein simi...    28   4.9  
At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At5g22570.1 68418.m02636 WRKY family transcription factor contai...    27   6.5  
At2g33390.1 68415.m04093 expressed protein                             27   6.5  

>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 441 CCVLRSEGR*PLRSTFVWTMFLQTFLSPNIL 349
           C + R EGR P+R +F W M  Q ++   +L
Sbjct: 729 CIIQRDEGRTPMRHSFHWLMEKQYYVEEPLL 759


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
            identical to acetyl-CoA carboxylase 1 (ACC1) [Arabidopsis
            thaliana] GI:11869927
          Length = 2247

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 441  CCVLRSEGR*PLRSTFVWTMFLQTFLSPNIL 349
            C + R EGR P+R +F W++  Q ++   +L
Sbjct: 1221 CIIQRDEGRTPMRHSFHWSLEKQYYVEEPLL 1251


>At2g03500.1 68415.m00309 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 432

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 291 CAKYKYNDTPYP*RRLIRHTIYLETGRSGGT*SKQKCSVKVTDPQNEE 434
           C+  ++  TP P + L  H      G SGGT S      +VTD    E
Sbjct: 349 CSSQEFYTTPPPPQPLHHHHFQTFNGSSGGTASTDSTHHQVTDSPTVE 396


>At5g04895.1 68418.m00514 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579;contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain, PF00035: Double-stranded RNA binding
           motif
          Length = 581

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +2

Query: 377 RNIVQTKVLRKGHRPSERRTQHKEDHTF 460
           ++++QT ++R GH P + +T+H + + F
Sbjct: 481 KSLLQTLLMRAGHSPPKYKTKHLKTNEF 508


>At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 552

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 479 FNYLTHKMYGPPCVVFFVLRVGDLYGALLFGLCSSRPSCLQIYCMAY*TPSWVRCIIIFI 300
           FN + H+ + P C     L  G +  +LL    S    CL+I   ++   S+V C ++ +
Sbjct: 195 FNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSH---SYVGCALVNM 251

Query: 299 FS 294
           +S
Sbjct: 252 YS 253


>At5g22570.1 68418.m02636 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 289

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 338 NTPYNIFGDRKVWRNIVQTKVLRKGHRPSERRTQHKEDH 454
           ++P  I+ D  +WR   Q  + +  H+ S  R  + +DH
Sbjct: 103 DSPDPIYYDGYLWRKYGQKSIKKSNHQRSYYRCSYNKDH 141


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 102 QKQCFAESTTGSETRPTEKIRRETQW 25
           + QC      G  +R T+KI+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,377
Number of Sequences: 28952
Number of extensions: 238880
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)