Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0373
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   5.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.7  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 18   KNRYEDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERNH 140
            +  YED  RK+   L +  +  R ++D ++   +L++  NH
Sbjct: 1015 REAYEDLRRKYHLTLARLAQMTRLNEDSKKSIPLLYDRFNH 1055


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +3

Query: 3    YVEKWKNRYEDAERKHKAYLLKSEKAKREH 92
            Y++ W++ + D++R    Y +K ++A +++
Sbjct: 1395 YIQPWESEFIDSQRVWAEYAMKRQEALQQN 1424


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 410  EEVEFLKQTVTELSRQIASLETDLNTAKLQE 502
            E +E  ++ +TEL  +I +L+TDL   +L +
Sbjct: 1244 ENLERNEEVITELREKIETLKTDLANFRLNK 1274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,134
Number of Sequences: 5004
Number of extensions: 25116
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)