Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0373
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 1.5
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 30 1.5
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 30 1.5
01_01_0552 - 4065623-4065698,4066133-4066218 29 2.0
08_01_0804 - 7774631-7775152,7775985-7776083 28 6.0
07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509 28 6.0
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 28 6.0
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 27 7.9
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 27 7.9
02_02_0458 - 10510465-10510515,10510606-10511007 27 7.9
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 21 NRYEDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERNHL 143
++YE +RK K + K E A++E ++ +YN + + R L
Sbjct: 1039 DQYETLQRKEKDVMEKFEAARKEELEIADKYNSVKQRRYEL 1079
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 42 RKHKAYLLKSEKAKREHDDLQRRYNILHEERNHL 143
R+ + + E+ KR++DDLQRRY N L
Sbjct: 652 RQEQEAAFREERLKRDYDDLQRRYQSSELRYNEL 685
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +3
Query: 6 VEKWKNRY-EDAER--KHKAYLLKSEKAK---REHDDLQRRYNILHEERNH 140
+++W N EDAER + A L SE + REHD LQ ++ H++ +H
Sbjct: 434 LDRWPNETAEDAERNWEDNAEELHSETMEDDAREHDHLQDEHDEWHDDESH 484
>01_01_0552 - 4065623-4065698,4066133-4066218
Length = 53
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 342 KACISTVLRRLSCLFCLYHSPACCI-TLC 259
K C+ L L C FC Y + CC+ LC
Sbjct: 23 KGCLYACLFTLCCCFCCYETCECCLECLC 51
>08_01_0804 - 7774631-7775152,7775985-7776083
Length = 206
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Frame = +1
Query: 412 GSGVPEADRHGAEQ--------ADRVAGDRPQHRQATRVLSLRSQPWLCHRK 543
G GV A HG Q +DR+ GD P + R+ S R+ +CH K
Sbjct: 133 GPGVQPAQGHGGRQLHQIRYTTSDRIFGDYPLLSRKVRMPSPRTLLTVCHHK 184
>07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509
Length = 562
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = -3
Query: 264 LCMNPRR-----PRADASAAGTR*IAFRRHSSACSARVLSLVTPSPGGFFLRAKCCS-DA 103
+C++PR P ++ GT + FR S R+ S + PG +F A C D
Sbjct: 150 VCISPRNHMVFTPLLASTCVGT--LEFRSVVEPVS-RIQSALATRPGSYFFLASCTGIDT 206
Query: 102 GGHRAH 85
G H H
Sbjct: 207 GRHEVH 212
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -3
Query: 264 LCMNPRR-----PRADASAAGTR*IAFRRHSSACSARVLSLVTPSPGGFFLRAKCCS-DA 103
+C++PR P ++ GT + FR + AR+ V+ SPG +FL A+C + D
Sbjct: 88 VCVSPRNHMVFTPLLASTCVGT--LEFRSVAEPL-ARIQPAVSKSPGSYFLLARCTAVDP 144
Query: 102 GGH 94
H
Sbjct: 145 DAH 147
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 282 PACCITLCMNPRRPRADASAAGTR*IAFRRHSSACSARVLSL---VTPSP 142
P C T PRR R ++ G + H +A VL L VTPSP
Sbjct: 62 PRCTRTAATCPRRSRLATASPGPSSVIAELHWAADGVSVLDLTSAVTPSP 111
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 272 QQAGEWYKQNKQLKRRSTVLMQALPVPP 355
++A E +Q L++RS VL ++LP PP
Sbjct: 537 ERAEEQARQEALLRKRSKVLQRSLPRPP 564
>02_02_0458 - 10510465-10510515,10510606-10511007
Length = 150
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 285 SPACCITLCMNPRRPRADASAAGTR 211
+PAC + L P P ADA+AAG +
Sbjct: 38 NPACSVELRRLPSPPPADAAAAGEK 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,217
Number of Sequences: 37544
Number of extensions: 191078
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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